Magnesium in PDB 8s5e: Cryo-Em Structure of ARF1-Decorated Membrane Tubules
Enzymatic activity of Cryo-Em Structure of ARF1-Decorated Membrane Tubules
All present enzymatic activity of Cryo-Em Structure of ARF1-Decorated Membrane Tubules:
3.6.5.2;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of ARF1-Decorated Membrane Tubules
(pdb code 8s5e). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the
Cryo-Em Structure of ARF1-Decorated Membrane Tubules, PDB code: 8s5e:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
Magnesium binding site 1 out
of 7 in 8s5e
Go back to
Magnesium Binding Sites List in 8s5e
Magnesium binding site 1 out
of 7 in the Cryo-Em Structure of ARF1-Decorated Membrane Tubules
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of ARF1-Decorated Membrane Tubules within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg201
b:30.9
occ:1.00
|
HG1
|
A:THR48
|
1.4
|
40.9
|
1.0
|
|
O2B
|
A:GSP202
|
1.9
|
44.7
|
1.0
|
|
O
|
A:HOH301
|
1.9
|
13.4
|
1.0
|
|
OG1
|
A:THR48
|
2.0
|
44.8
|
1.0
|
|
O
|
A:HOH302
|
2.0
|
14.1
|
1.0
|
|
OG1
|
A:THR31
|
2.0
|
39.1
|
1.0
|
|
HOG2
|
A:GSP202
|
2.1
|
40.9
|
1.0
|
|
O2G
|
A:GSP202
|
2.1
|
47.4
|
1.0
|
|
HG1
|
A:THR31
|
2.2
|
35.5
|
1.0
|
|
PB
|
A:GSP202
|
3.2
|
36.8
|
1.0
|
|
CB
|
A:THR48
|
3.2
|
39.1
|
1.0
|
|
HB
|
A:THR48
|
3.3
|
38.5
|
1.0
|
|
H
|
A:THR31
|
3.3
|
31.4
|
1.0
|
|
PG
|
A:GSP202
|
3.4
|
38.4
|
1.0
|
|
CB
|
A:THR31
|
3.4
|
35.0
|
1.0
|
|
O3B
|
A:GSP202
|
3.5
|
36.6
|
1.0
|
|
H
|
A:THR48
|
3.7
|
36.7
|
1.0
|
|
HB
|
A:THR31
|
3.7
|
33.9
|
1.0
|
|
OD1
|
A:ASP67
|
3.8
|
44.9
|
1.0
|
|
HB2
|
A:LYS30
|
3.9
|
30.7
|
1.0
|
|
HG22
|
A:THR48
|
4.0
|
36.1
|
1.0
|
|
CG2
|
A:THR48
|
4.0
|
36.2
|
1.0
|
|
O1B
|
A:GSP202
|
4.0
|
37.9
|
1.0
|
|
HE2
|
A:LYS30
|
4.0
|
31.4
|
1.0
|
|
HG23
|
A:THR48
|
4.0
|
37.0
|
1.0
|
|
OD2
|
A:ASP67
|
4.0
|
43.2
|
1.0
|
|
N
|
A:THR31
|
4.0
|
30.2
|
1.0
|
|
N
|
A:THR48
|
4.1
|
33.9
|
1.0
|
|
HG22
|
A:THR31
|
4.1
|
35.9
|
1.0
|
|
HOG3
|
A:GSP202
|
4.2
|
34.4
|
1.0
|
|
CG2
|
A:THR31
|
4.2
|
33.9
|
1.0
|
|
CA
|
A:THR48
|
4.3
|
33.1
|
1.0
|
|
O3A
|
A:GSP202
|
4.3
|
36.7
|
1.0
|
|
HG23
|
A:THR31
|
4.3
|
31.9
|
1.0
|
|
O3G
|
A:GSP202
|
4.3
|
28.1
|
1.0
|
|
CA
|
A:THR31
|
4.3
|
31.9
|
1.0
|
|
CG
|
A:ASP67
|
4.3
|
43.4
|
1.0
|
|
O1A
|
A:GSP202
|
4.5
|
36.0
|
1.0
|
|
O
|
A:VAL68
|
4.5
|
39.4
|
1.0
|
|
HA
|
A:THR31
|
4.6
|
32.5
|
1.0
|
|
O
|
A:ILE46
|
4.7
|
46.5
|
1.0
|
|
HA2
|
A:GLY69
|
4.7
|
35.5
|
1.0
|
|
HA
|
A:THR48
|
4.7
|
35.1
|
1.0
|
|
HA
|
A:PRO47
|
4.8
|
36.8
|
1.0
|
|
O2A
|
A:GSP202
|
4.8
|
40.7
|
1.0
|
|
HZ2
|
A:LYS30
|
4.8
|
30.6
|
1.0
|
|
PA
|
A:GSP202
|
4.8
|
41.3
|
1.0
|
|
S1G
|
A:GSP202
|
4.8
|
62.0
|
1.0
|
|
HZ1
|
A:LYS30
|
4.9
|
32.0
|
1.0
|
|
HG21
|
A:THR48
|
4.9
|
35.8
|
1.0
|
|
CB
|
A:LYS30
|
4.9
|
29.9
|
1.0
|
|
CE
|
A:LYS30
|
4.9
|
31.7
|
1.0
|
|
H
|
A:LYS30
|
4.9
|
30.8
|
1.0
|
|
Magnesium binding site 2 out
of 7 in 8s5e
Go back to
Magnesium Binding Sites List in 8s5e
Magnesium binding site 2 out
of 7 in the Cryo-Em Structure of ARF1-Decorated Membrane Tubules
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of ARF1-Decorated Membrane Tubules within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg201
b:30.9
occ:1.00
|
HG1
|
B:THR48
|
1.4
|
40.9
|
1.0
|
|
O2B
|
B:GSP202
|
1.9
|
44.7
|
1.0
|
|
O
|
B:HOH301
|
2.0
|
13.4
|
1.0
|
|
OG1
|
B:THR48
|
2.0
|
44.8
|
1.0
|
|
OG1
|
B:THR31
|
2.0
|
39.1
|
1.0
|
|
O
|
B:HOH302
|
2.1
|
14.1
|
1.0
|
|
HOG2
|
B:GSP202
|
2.1
|
40.9
|
1.0
|
|
O2G
|
B:GSP202
|
2.1
|
47.4
|
1.0
|
|
HG1
|
B:THR31
|
2.2
|
35.5
|
1.0
|
|
PB
|
B:GSP202
|
3.2
|
36.8
|
1.0
|
|
CB
|
B:THR48
|
3.2
|
39.1
|
1.0
|
|
HB
|
B:THR48
|
3.3
|
38.5
|
1.0
|
|
H
|
B:THR31
|
3.3
|
31.4
|
1.0
|
|
PG
|
B:GSP202
|
3.4
|
38.4
|
1.0
|
|
CB
|
B:THR31
|
3.4
|
35.0
|
1.0
|
|
O3B
|
B:GSP202
|
3.5
|
36.6
|
1.0
|
|
H
|
B:THR48
|
3.7
|
36.7
|
1.0
|
|
HB
|
B:THR31
|
3.7
|
33.9
|
1.0
|
|
OD1
|
B:ASP67
|
3.8
|
44.9
|
1.0
|
|
HB2
|
B:LYS30
|
3.9
|
30.7
|
1.0
|
|
HG22
|
B:THR48
|
4.0
|
36.1
|
1.0
|
|
CG2
|
B:THR48
|
4.0
|
36.2
|
1.0
|
|
O1B
|
B:GSP202
|
4.0
|
37.9
|
1.0
|
|
HG23
|
B:THR48
|
4.0
|
37.0
|
1.0
|
|
HE2
|
B:LYS30
|
4.0
|
31.4
|
1.0
|
|
OD2
|
B:ASP67
|
4.0
|
43.2
|
1.0
|
|
N
|
B:THR31
|
4.0
|
30.2
|
1.0
|
|
N
|
B:THR48
|
4.1
|
33.9
|
1.0
|
|
HG22
|
B:THR31
|
4.1
|
35.9
|
1.0
|
|
HOG3
|
B:GSP202
|
4.2
|
34.4
|
1.0
|
|
CG2
|
B:THR31
|
4.2
|
33.9
|
1.0
|
|
CA
|
B:THR48
|
4.3
|
33.1
|
1.0
|
|
O3A
|
B:GSP202
|
4.3
|
36.7
|
1.0
|
|
HG23
|
B:THR31
|
4.3
|
31.9
|
1.0
|
|
O3G
|
B:GSP202
|
4.3
|
28.1
|
1.0
|
|
CA
|
B:THR31
|
4.3
|
31.9
|
1.0
|
|
CG
|
B:ASP67
|
4.3
|
43.4
|
1.0
|
|
O1A
|
B:GSP202
|
4.5
|
36.0
|
1.0
|
|
O
|
B:VAL68
|
4.5
|
39.4
|
1.0
|
|
HA
|
B:THR31
|
4.6
|
32.5
|
1.0
|
|
O
|
B:ILE46
|
4.7
|
46.5
|
1.0
|
|
HA2
|
B:GLY69
|
4.7
|
35.5
|
1.0
|
|
HA
|
B:THR48
|
4.7
|
35.1
|
1.0
|
|
HA
|
B:PRO47
|
4.8
|
36.8
|
1.0
|
|
O2A
|
B:GSP202
|
4.8
|
40.7
|
1.0
|
|
HZ2
|
B:LYS30
|
4.8
|
30.6
|
1.0
|
|
PA
|
B:GSP202
|
4.8
|
41.3
|
1.0
|
|
S1G
|
B:GSP202
|
4.8
|
62.0
|
1.0
|
|
HZ1
|
B:LYS30
|
4.9
|
32.0
|
1.0
|
|
HG21
|
B:THR48
|
4.9
|
35.8
|
1.0
|
|
CB
|
B:LYS30
|
4.9
|
29.9
|
1.0
|
|
CE
|
B:LYS30
|
4.9
|
31.7
|
1.0
|
|
H
|
B:LYS30
|
4.9
|
30.8
|
1.0
|
|
Magnesium binding site 3 out
of 7 in 8s5e
Go back to
Magnesium Binding Sites List in 8s5e
Magnesium binding site 3 out
of 7 in the Cryo-Em Structure of ARF1-Decorated Membrane Tubules
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of ARF1-Decorated Membrane Tubules within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg201
b:30.9
occ:1.00
|
HG1
|
C:THR48
|
1.4
|
40.9
|
1.0
|
|
O2B
|
C:GSP202
|
1.9
|
44.7
|
1.0
|
|
O
|
C:HOH301
|
2.0
|
13.4
|
1.0
|
|
OG1
|
C:THR48
|
2.0
|
44.8
|
1.0
|
|
O
|
C:HOH302
|
2.0
|
14.1
|
1.0
|
|
OG1
|
C:THR31
|
2.0
|
39.1
|
1.0
|
|
HOG2
|
C:GSP202
|
2.1
|
40.9
|
1.0
|
|
O2G
|
C:GSP202
|
2.2
|
47.4
|
1.0
|
|
HG1
|
C:THR31
|
2.2
|
35.5
|
1.0
|
|
PB
|
C:GSP202
|
3.2
|
36.8
|
1.0
|
|
CB
|
C:THR48
|
3.2
|
39.1
|
1.0
|
|
HB
|
C:THR48
|
3.3
|
38.5
|
1.0
|
|
H
|
C:THR31
|
3.3
|
31.4
|
1.0
|
|
PG
|
C:GSP202
|
3.4
|
38.4
|
1.0
|
|
CB
|
C:THR31
|
3.4
|
35.0
|
1.0
|
|
O3B
|
C:GSP202
|
3.5
|
36.6
|
1.0
|
|
H
|
C:THR48
|
3.7
|
36.7
|
1.0
|
|
HB
|
C:THR31
|
3.7
|
33.9
|
1.0
|
|
OD1
|
C:ASP67
|
3.8
|
44.9
|
1.0
|
|
HB2
|
C:LYS30
|
3.9
|
30.7
|
1.0
|
|
HG22
|
C:THR48
|
4.0
|
36.1
|
1.0
|
|
CG2
|
C:THR48
|
4.0
|
36.2
|
1.0
|
|
O1B
|
C:GSP202
|
4.0
|
37.9
|
1.0
|
|
HG23
|
C:THR48
|
4.0
|
37.0
|
1.0
|
|
HE2
|
C:LYS30
|
4.0
|
31.4
|
1.0
|
|
OD2
|
C:ASP67
|
4.0
|
43.2
|
1.0
|
|
N
|
C:THR31
|
4.0
|
30.2
|
1.0
|
|
N
|
C:THR48
|
4.1
|
33.9
|
1.0
|
|
HG22
|
C:THR31
|
4.1
|
35.9
|
1.0
|
|
HOG3
|
C:GSP202
|
4.2
|
34.4
|
1.0
|
|
CG2
|
C:THR31
|
4.2
|
33.9
|
1.0
|
|
CA
|
C:THR48
|
4.3
|
33.1
|
1.0
|
|
O3A
|
C:GSP202
|
4.3
|
36.7
|
1.0
|
|
HG23
|
C:THR31
|
4.3
|
31.9
|
1.0
|
|
O3G
|
C:GSP202
|
4.3
|
28.1
|
1.0
|
|
CA
|
C:THR31
|
4.3
|
31.9
|
1.0
|
|
CG
|
C:ASP67
|
4.3
|
43.4
|
1.0
|
|
O1A
|
C:GSP202
|
4.5
|
36.0
|
1.0
|
|
O
|
C:VAL68
|
4.5
|
39.4
|
1.0
|
|
HA
|
C:THR31
|
4.6
|
32.5
|
1.0
|
|
O
|
C:ILE46
|
4.7
|
46.5
|
1.0
|
|
HA2
|
C:GLY69
|
4.7
|
35.5
|
1.0
|
|
HA
|
C:THR48
|
4.7
|
35.1
|
1.0
|
|
HA
|
C:PRO47
|
4.8
|
36.8
|
1.0
|
|
O2A
|
C:GSP202
|
4.8
|
40.7
|
1.0
|
|
HZ2
|
C:LYS30
|
4.8
|
30.6
|
1.0
|
|
PA
|
C:GSP202
|
4.8
|
41.3
|
1.0
|
|
S1G
|
C:GSP202
|
4.8
|
62.0
|
1.0
|
|
HZ1
|
C:LYS30
|
4.9
|
32.0
|
1.0
|
|
HG21
|
C:THR48
|
4.9
|
35.8
|
1.0
|
|
CB
|
C:LYS30
|
4.9
|
29.9
|
1.0
|
|
CE
|
C:LYS30
|
4.9
|
31.7
|
1.0
|
|
H
|
C:LYS30
|
4.9
|
30.8
|
1.0
|
|
Magnesium binding site 4 out
of 7 in 8s5e
Go back to
Magnesium Binding Sites List in 8s5e
Magnesium binding site 4 out
of 7 in the Cryo-Em Structure of ARF1-Decorated Membrane Tubules
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of ARF1-Decorated Membrane Tubules within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg201
b:30.9
occ:1.00
|
HG1
|
D:THR48
|
1.4
|
40.9
|
1.0
|
|
O
|
D:HOH301
|
1.8
|
14.1
|
1.0
|
|
O2B
|
D:GSP202
|
1.9
|
44.7
|
1.0
|
|
O
|
D:HOH302
|
2.0
|
13.4
|
1.0
|
|
OG1
|
D:THR48
|
2.0
|
44.8
|
1.0
|
|
OG1
|
D:THR31
|
2.0
|
39.1
|
1.0
|
|
HOG2
|
D:GSP202
|
2.1
|
40.9
|
1.0
|
|
O2G
|
D:GSP202
|
2.2
|
47.4
|
1.0
|
|
HG1
|
D:THR31
|
2.2
|
35.5
|
1.0
|
|
PB
|
D:GSP202
|
3.2
|
36.8
|
1.0
|
|
CB
|
D:THR48
|
3.2
|
39.1
|
1.0
|
|
HB
|
D:THR48
|
3.3
|
38.5
|
1.0
|
|
H
|
D:THR31
|
3.3
|
31.4
|
1.0
|
|
PG
|
D:GSP202
|
3.4
|
38.4
|
1.0
|
|
CB
|
D:THR31
|
3.4
|
35.0
|
1.0
|
|
O3B
|
D:GSP202
|
3.5
|
36.6
|
1.0
|
|
H
|
D:THR48
|
3.7
|
36.7
|
1.0
|
|
HB
|
D:THR31
|
3.7
|
33.9
|
1.0
|
|
OD1
|
D:ASP67
|
3.8
|
44.9
|
1.0
|
|
HB2
|
D:LYS30
|
3.9
|
30.7
|
1.0
|
|
HG22
|
D:THR48
|
4.0
|
36.1
|
1.0
|
|
CG2
|
D:THR48
|
4.0
|
36.2
|
1.0
|
|
O1B
|
D:GSP202
|
4.0
|
37.9
|
1.0
|
|
HG23
|
D:THR48
|
4.0
|
37.0
|
1.0
|
|
HE2
|
D:LYS30
|
4.0
|
31.4
|
1.0
|
|
OD2
|
D:ASP67
|
4.0
|
43.2
|
1.0
|
|
N
|
D:THR31
|
4.0
|
30.2
|
1.0
|
|
N
|
D:THR48
|
4.1
|
33.9
|
1.0
|
|
HG22
|
D:THR31
|
4.1
|
35.9
|
1.0
|
|
HOG3
|
D:GSP202
|
4.2
|
34.4
|
1.0
|
|
CG2
|
D:THR31
|
4.2
|
33.9
|
1.0
|
|
CA
|
D:THR48
|
4.3
|
33.1
|
1.0
|
|
O3A
|
D:GSP202
|
4.3
|
36.7
|
1.0
|
|
HG23
|
D:THR31
|
4.3
|
31.9
|
1.0
|
|
O3G
|
D:GSP202
|
4.3
|
28.1
|
1.0
|
|
CA
|
D:THR31
|
4.3
|
31.9
|
1.0
|
|
CG
|
D:ASP67
|
4.3
|
43.4
|
1.0
|
|
O1A
|
D:GSP202
|
4.5
|
36.0
|
1.0
|
|
O
|
D:VAL68
|
4.5
|
39.4
|
1.0
|
|
HA
|
D:THR31
|
4.6
|
32.5
|
1.0
|
|
O
|
D:ILE46
|
4.7
|
46.5
|
1.0
|
|
HA2
|
D:GLY69
|
4.7
|
35.5
|
1.0
|
|
HA
|
D:THR48
|
4.7
|
35.1
|
1.0
|
|
HA
|
D:PRO47
|
4.8
|
36.8
|
1.0
|
|
O2A
|
D:GSP202
|
4.8
|
40.7
|
1.0
|
|
HZ2
|
D:LYS30
|
4.8
|
30.6
|
1.0
|
|
PA
|
D:GSP202
|
4.8
|
41.3
|
1.0
|
|
S1G
|
D:GSP202
|
4.8
|
62.0
|
1.0
|
|
HZ1
|
D:LYS30
|
4.9
|
32.0
|
1.0
|
|
HG21
|
D:THR48
|
4.9
|
35.8
|
1.0
|
|
CB
|
D:LYS30
|
4.9
|
29.9
|
1.0
|
|
CE
|
D:LYS30
|
4.9
|
31.7
|
1.0
|
|
H
|
D:LYS30
|
4.9
|
30.8
|
1.0
|
|
Magnesium binding site 5 out
of 7 in 8s5e
Go back to
Magnesium Binding Sites List in 8s5e
Magnesium binding site 5 out
of 7 in the Cryo-Em Structure of ARF1-Decorated Membrane Tubules
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of ARF1-Decorated Membrane Tubules within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg201
b:30.9
occ:1.00
|
HG1
|
E:THR48
|
1.4
|
40.9
|
1.0
|
|
O2B
|
E:GSP202
|
1.9
|
44.7
|
1.0
|
|
O
|
E:HOH301
|
2.0
|
14.1
|
1.0
|
|
O
|
E:HOH302
|
2.0
|
13.4
|
1.0
|
|
OG1
|
E:THR48
|
2.0
|
44.8
|
1.0
|
|
OG1
|
E:THR31
|
2.0
|
39.1
|
1.0
|
|
HOG2
|
E:GSP202
|
2.1
|
40.9
|
1.0
|
|
O2G
|
E:GSP202
|
2.1
|
47.4
|
1.0
|
|
HG1
|
E:THR31
|
2.2
|
35.5
|
1.0
|
|
PB
|
E:GSP202
|
3.2
|
36.8
|
1.0
|
|
CB
|
E:THR48
|
3.2
|
39.1
|
1.0
|
|
HB
|
E:THR48
|
3.3
|
38.5
|
1.0
|
|
H
|
E:THR31
|
3.3
|
31.4
|
1.0
|
|
PG
|
E:GSP202
|
3.4
|
38.4
|
1.0
|
|
CB
|
E:THR31
|
3.4
|
35.0
|
1.0
|
|
O3B
|
E:GSP202
|
3.5
|
36.6
|
1.0
|
|
H
|
E:THR48
|
3.7
|
36.7
|
1.0
|
|
HB
|
E:THR31
|
3.7
|
33.9
|
1.0
|
|
OD1
|
E:ASP67
|
3.8
|
44.9
|
1.0
|
|
HB2
|
E:LYS30
|
3.9
|
30.7
|
1.0
|
|
HG22
|
E:THR48
|
4.0
|
36.1
|
1.0
|
|
CG2
|
E:THR48
|
4.0
|
36.2
|
1.0
|
|
O1B
|
E:GSP202
|
4.0
|
37.9
|
1.0
|
|
HG23
|
E:THR48
|
4.0
|
37.0
|
1.0
|
|
HE2
|
E:LYS30
|
4.0
|
31.4
|
1.0
|
|
OD2
|
E:ASP67
|
4.0
|
43.2
|
1.0
|
|
N
|
E:THR31
|
4.0
|
30.2
|
1.0
|
|
N
|
E:THR48
|
4.1
|
33.9
|
1.0
|
|
HG22
|
E:THR31
|
4.1
|
35.9
|
1.0
|
|
HOG3
|
E:GSP202
|
4.2
|
34.4
|
1.0
|
|
CG2
|
E:THR31
|
4.2
|
33.9
|
1.0
|
|
CA
|
E:THR48
|
4.3
|
33.1
|
1.0
|
|
O3A
|
E:GSP202
|
4.3
|
36.7
|
1.0
|
|
HG23
|
E:THR31
|
4.3
|
31.9
|
1.0
|
|
O3G
|
E:GSP202
|
4.3
|
28.1
|
1.0
|
|
CA
|
E:THR31
|
4.3
|
31.9
|
1.0
|
|
CG
|
E:ASP67
|
4.3
|
43.4
|
1.0
|
|
O1A
|
E:GSP202
|
4.5
|
36.0
|
1.0
|
|
O
|
E:VAL68
|
4.5
|
39.4
|
1.0
|
|
HA
|
E:THR31
|
4.6
|
32.5
|
1.0
|
|
O
|
E:ILE46
|
4.7
|
46.5
|
1.0
|
|
HA2
|
E:GLY69
|
4.7
|
35.5
|
1.0
|
|
HA
|
E:THR48
|
4.7
|
35.1
|
1.0
|
|
HA
|
E:PRO47
|
4.8
|
36.8
|
1.0
|
|
O2A
|
E:GSP202
|
4.8
|
40.7
|
1.0
|
|
HZ2
|
E:LYS30
|
4.8
|
30.6
|
1.0
|
|
PA
|
E:GSP202
|
4.8
|
41.3
|
1.0
|
|
S1G
|
E:GSP202
|
4.8
|
62.0
|
1.0
|
|
HZ1
|
E:LYS30
|
4.9
|
32.0
|
1.0
|
|
HG21
|
E:THR48
|
4.9
|
35.8
|
1.0
|
|
CB
|
E:LYS30
|
4.9
|
29.9
|
1.0
|
|
CE
|
E:LYS30
|
4.9
|
31.7
|
1.0
|
|
H
|
E:LYS30
|
4.9
|
30.8
|
1.0
|
|
Magnesium binding site 6 out
of 7 in 8s5e
Go back to
Magnesium Binding Sites List in 8s5e
Magnesium binding site 6 out
of 7 in the Cryo-Em Structure of ARF1-Decorated Membrane Tubules
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of ARF1-Decorated Membrane Tubules within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg201
b:30.9
occ:1.00
|
HG1
|
F:THR48
|
1.4
|
40.9
|
1.0
|
|
O2B
|
F:GSP202
|
1.9
|
44.7
|
1.0
|
|
O
|
F:HOH301
|
1.9
|
13.4
|
1.0
|
|
OG1
|
F:THR48
|
2.0
|
44.8
|
1.0
|
|
O
|
F:HOH302
|
2.0
|
14.1
|
1.0
|
|
OG1
|
F:THR31
|
2.0
|
39.1
|
1.0
|
|
HOG2
|
F:GSP202
|
2.1
|
40.9
|
1.0
|
|
O2G
|
F:GSP202
|
2.1
|
47.4
|
1.0
|
|
HG1
|
F:THR31
|
2.2
|
35.5
|
1.0
|
|
PB
|
F:GSP202
|
3.2
|
36.8
|
1.0
|
|
CB
|
F:THR48
|
3.2
|
39.1
|
1.0
|
|
HB
|
F:THR48
|
3.3
|
38.5
|
1.0
|
|
H
|
F:THR31
|
3.3
|
31.4
|
1.0
|
|
PG
|
F:GSP202
|
3.4
|
38.4
|
1.0
|
|
CB
|
F:THR31
|
3.4
|
35.0
|
1.0
|
|
O3B
|
F:GSP202
|
3.5
|
36.6
|
1.0
|
|
H
|
F:THR48
|
3.7
|
36.7
|
1.0
|
|
HB
|
F:THR31
|
3.7
|
33.9
|
1.0
|
|
OD1
|
F:ASP67
|
3.8
|
44.9
|
1.0
|
|
HB2
|
F:LYS30
|
3.9
|
30.7
|
1.0
|
|
HG22
|
F:THR48
|
4.0
|
36.1
|
1.0
|
|
CG2
|
F:THR48
|
4.0
|
36.2
|
1.0
|
|
O1B
|
F:GSP202
|
4.0
|
37.9
|
1.0
|
|
HE2
|
F:LYS30
|
4.0
|
31.4
|
1.0
|
|
HG23
|
F:THR48
|
4.0
|
37.0
|
1.0
|
|
OD2
|
F:ASP67
|
4.0
|
43.2
|
1.0
|
|
N
|
F:THR31
|
4.0
|
30.2
|
1.0
|
|
N
|
F:THR48
|
4.1
|
33.9
|
1.0
|
|
HG22
|
F:THR31
|
4.1
|
35.9
|
1.0
|
|
HOG3
|
F:GSP202
|
4.2
|
34.4
|
1.0
|
|
CG2
|
F:THR31
|
4.2
|
33.9
|
1.0
|
|
CA
|
F:THR48
|
4.3
|
33.1
|
1.0
|
|
O3A
|
F:GSP202
|
4.3
|
36.7
|
1.0
|
|
HG23
|
F:THR31
|
4.3
|
31.9
|
1.0
|
|
O3G
|
F:GSP202
|
4.3
|
28.1
|
1.0
|
|
CA
|
F:THR31
|
4.3
|
31.9
|
1.0
|
|
CG
|
F:ASP67
|
4.3
|
43.4
|
1.0
|
|
O1A
|
F:GSP202
|
4.5
|
36.0
|
1.0
|
|
O
|
F:VAL68
|
4.5
|
39.4
|
1.0
|
|
HA
|
F:THR31
|
4.6
|
32.5
|
1.0
|
|
O
|
F:ILE46
|
4.7
|
46.5
|
1.0
|
|
HA2
|
F:GLY69
|
4.7
|
35.5
|
1.0
|
|
HA
|
F:THR48
|
4.7
|
35.1
|
1.0
|
|
HA
|
F:PRO47
|
4.8
|
36.8
|
1.0
|
|
O2A
|
F:GSP202
|
4.8
|
40.7
|
1.0
|
|
HZ2
|
F:LYS30
|
4.8
|
30.6
|
1.0
|
|
PA
|
F:GSP202
|
4.8
|
41.3
|
1.0
|
|
S1G
|
F:GSP202
|
4.8
|
62.0
|
1.0
|
|
HZ1
|
F:LYS30
|
4.9
|
32.0
|
1.0
|
|
HG21
|
F:THR48
|
4.9
|
35.8
|
1.0
|
|
CB
|
F:LYS30
|
4.9
|
29.9
|
1.0
|
|
CE
|
F:LYS30
|
4.9
|
31.7
|
1.0
|
|
H
|
F:LYS30
|
4.9
|
30.8
|
1.0
|
|
Magnesium binding site 7 out
of 7 in 8s5e
Go back to
Magnesium Binding Sites List in 8s5e
Magnesium binding site 7 out
of 7 in the Cryo-Em Structure of ARF1-Decorated Membrane Tubules
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of ARF1-Decorated Membrane Tubules within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg201
b:30.9
occ:1.00
|
HG1
|
G:THR48
|
1.4
|
40.9
|
1.0
|
|
O2B
|
G:GSP202
|
1.9
|
44.7
|
1.0
|
|
O
|
G:HOH301
|
2.0
|
13.4
|
1.0
|
|
OG1
|
G:THR48
|
2.0
|
44.8
|
1.0
|
|
OG1
|
G:THR31
|
2.0
|
39.1
|
1.0
|
|
O
|
G:HOH302
|
2.0
|
14.1
|
1.0
|
|
HOG2
|
G:GSP202
|
2.1
|
40.9
|
1.0
|
|
O2G
|
G:GSP202
|
2.1
|
47.4
|
1.0
|
|
HG1
|
G:THR31
|
2.2
|
35.5
|
1.0
|
|
PB
|
G:GSP202
|
3.2
|
36.8
|
1.0
|
|
CB
|
G:THR48
|
3.2
|
39.1
|
1.0
|
|
HB
|
G:THR48
|
3.3
|
38.5
|
1.0
|
|
H
|
G:THR31
|
3.3
|
31.4
|
1.0
|
|
PG
|
G:GSP202
|
3.4
|
38.4
|
1.0
|
|
CB
|
G:THR31
|
3.4
|
35.0
|
1.0
|
|
O3B
|
G:GSP202
|
3.5
|
36.6
|
1.0
|
|
H
|
G:THR48
|
3.7
|
36.7
|
1.0
|
|
HB
|
G:THR31
|
3.7
|
33.9
|
1.0
|
|
OD1
|
G:ASP67
|
3.8
|
44.9
|
1.0
|
|
HB2
|
G:LYS30
|
3.9
|
30.7
|
1.0
|
|
HG22
|
G:THR48
|
4.0
|
36.1
|
1.0
|
|
CG2
|
G:THR48
|
4.0
|
36.2
|
1.0
|
|
O1B
|
G:GSP202
|
4.0
|
37.9
|
1.0
|
|
HE2
|
G:LYS30
|
4.0
|
31.4
|
1.0
|
|
HG23
|
G:THR48
|
4.0
|
37.0
|
1.0
|
|
OD2
|
G:ASP67
|
4.0
|
43.2
|
1.0
|
|
N
|
G:THR31
|
4.0
|
30.2
|
1.0
|
|
N
|
G:THR48
|
4.1
|
33.9
|
1.0
|
|
HG22
|
G:THR31
|
4.1
|
35.9
|
1.0
|
|
HOG3
|
G:GSP202
|
4.2
|
34.4
|
1.0
|
|
CG2
|
G:THR31
|
4.2
|
33.9
|
1.0
|
|
CA
|
G:THR48
|
4.3
|
33.1
|
1.0
|
|
O3A
|
G:GSP202
|
4.3
|
36.7
|
1.0
|
|
HG23
|
G:THR31
|
4.3
|
31.9
|
1.0
|
|
O3G
|
G:GSP202
|
4.3
|
28.1
|
1.0
|
|
CA
|
G:THR31
|
4.3
|
31.9
|
1.0
|
|
CG
|
G:ASP67
|
4.3
|
43.4
|
1.0
|
|
O1A
|
G:GSP202
|
4.5
|
36.0
|
1.0
|
|
O
|
G:VAL68
|
4.5
|
39.4
|
1.0
|
|
HA
|
G:THR31
|
4.6
|
32.5
|
1.0
|
|
O
|
G:ILE46
|
4.7
|
46.5
|
1.0
|
|
HA2
|
G:GLY69
|
4.7
|
35.5
|
1.0
|
|
HA
|
G:THR48
|
4.7
|
35.1
|
1.0
|
|
HA
|
G:PRO47
|
4.8
|
36.8
|
1.0
|
|
O2A
|
G:GSP202
|
4.8
|
40.7
|
1.0
|
|
HZ2
|
G:LYS30
|
4.8
|
30.6
|
1.0
|
|
PA
|
G:GSP202
|
4.8
|
41.3
|
1.0
|
|
S1G
|
G:GSP202
|
4.8
|
62.0
|
1.0
|
|
HZ1
|
G:LYS30
|
4.9
|
32.0
|
1.0
|
|
HG21
|
G:THR48
|
4.9
|
35.8
|
1.0
|
|
CB
|
G:LYS30
|
4.9
|
29.9
|
1.0
|
|
CE
|
G:LYS30
|
4.9
|
31.7
|
1.0
|
|
H
|
G:LYS30
|
4.9
|
30.8
|
1.0
|
|
Reference:
C.Haupt,
D.A.Semchonok,
M.T.Stubbs,
K.Bacia,
A.Desfosses.
Cryo-Em Structure of ARF1-Decorated Membrane Tubules Cell Structure 2024.
Page generated: Fri Aug 15 14:24:06 2025
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