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Magnesium in PDB 8s7g: Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant

Enzymatic activity of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant

All present enzymatic activity of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant:
3.4.21.88;

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant (pdb code 8s7g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 11 binding sites of Magnesium where determined in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant, PDB code: 8s7g:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 11 in 8s7g

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Magnesium binding site 1 out of 11 in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg401

b:155.7
occ:1.00
 O2B D:AGS402 1.7 164.4 1.0
OG1 D:THR72 2.0 139.1 1.0
PB D:AGS402 2.4 167.9 1.0
O3B D:AGS402 2.5 165.1 1.0
O3A D:AGS402 2.8 174.4 1.0
CB D:THR72 3.2 136.4 1.0
S1G D:AGS402 3.2 171.1 1.0
PG D:AGS402 3.4 169.3 1.0
O1A D:AGS402 3.6 164.1 1.0
NZ C:LYS249 3.7 164.5 1.0
PA D:AGS402 3.8 180.3 1.0
O1B D:AGS402 3.8 160.8 1.0
CG2 D:THR72 4.0 135.3 1.0
OD2 D:ASP143 4.0 118.9 1.0
O2G D:AGS402 4.2 167.1 1.0
N D:THR72 4.3 138.1 1.0
CA D:THR72 4.3 139.8 1.0
O2A D:AGS402 4.5 172.3 1.0
O3G D:AGS402 4.6 162.9 1.0
OD1 D:ASP143 4.6 125.4 1.0
CG D:ASP143 4.8 123.7 1.0
CG D:LYS71 4.8 131.7 1.0
CE C:LYS249 4.9 164.0 1.0
O5' D:AGS402 4.9 168.2 1.0

Magnesium binding site 2 out of 11 in 8s7g

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Magnesium binding site 2 out of 11 in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg401

b:99.1
occ:1.00
 OG1 E:THR72 1.8 108.0 1.0
O3B E:AGS402 2.5 118.0 1.0
CB E:THR72 3.1 102.4 1.0
PG E:AGS402 3.5 129.9 1.0
OD2 E:ASP143 3.6 100.0 1.0
PB E:AGS402 3.7 119.3 1.0
O3A E:AGS402 3.7 119.1 1.0
CG2 E:THR72 3.8 101.2 1.0
S1G E:AGS402 3.8 139.0 1.0
O3G E:AGS402 4.0 114.8 1.0
NZ D:LYS249 4.0 103.9 1.0
CE D:LYS249 4.1 105.2 1.0
O2B E:AGS402 4.2 113.6 1.0
CA E:THR72 4.2 98.6 1.0
OD1 E:ASP143 4.2 108.6 1.0
N E:THR72 4.3 98.2 1.0
CG E:ASP143 4.4 106.3 1.0
OE2 E:GLU95 4.4 126.6 1.0
CG E:LYS71 4.7 100.6 1.0
OE1 E:GLU95 4.8 134.1 1.0
O1B E:AGS402 4.9 120.2 1.0
CD E:GLU95 4.9 130.8 1.0
O2G E:AGS402 4.9 124.5 1.0
PA E:AGS402 4.9 125.1 1.0

Magnesium binding site 3 out of 11 in 8s7g

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Magnesium binding site 3 out of 11 in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg401

b:96.9
occ:1.00
 O3B F:AGS402 1.7 99.3 1.0
OG1 F:THR72 2.3 91.5 1.0
PG F:AGS402 2.6 111.6 1.0
S1G F:AGS402 2.7 129.9 1.0
PB F:AGS402 2.8 99.6 1.0
O2B F:AGS402 3.0 100.6 1.0
CB F:THR72 3.3 88.6 1.0
O3A F:AGS402 3.5 97.0 1.0
O3G F:AGS402 3.6 97.8 1.0
O2G F:AGS402 3.8 105.8 1.0
NZ E:LYS249 4.0 81.7 1.0
N F:THR72 4.0 89.0 1.0
O1B F:AGS402 4.0 102.6 1.0
CA F:THR72 4.3 90.8 1.0
CG2 F:THR72 4.4 84.7 1.0
OD2 F:ASP143 4.5 88.4 1.0
O1A F:AGS402 4.5 105.2 1.0
PA F:AGS402 4.6 104.5 1.0
NZ F:LYS71 4.7 84.8 1.0
OD1 F:ASP143 4.8 88.3 1.0
CE F:LYS71 4.9 80.8 1.0
CB F:LYS71 5.0 86.7 1.0

Magnesium binding site 4 out of 11 in 8s7g

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Magnesium binding site 4 out of 11 in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg401

b:87.7
occ:1.00
 OG1 G:THR72 2.0 88.8 1.0
O3B G:AGS402 2.6 95.6 1.0
CB G:THR72 3.1 80.5 1.0
OD2 G:ASP143 3.5 87.4 1.0
S1G G:AGS402 3.6 130.4 1.0
PG G:AGS402 3.6 113.9 1.0
PB G:AGS402 3.7 91.8 1.0
CG2 G:THR72 3.9 79.7 1.0
O3A G:AGS402 4.0 94.6 1.0
O2B G:AGS402 4.0 96.2 1.0
CA G:THR72 4.2 73.0 1.0
O3G G:AGS402 4.3 89.7 1.0
N G:THR72 4.3 75.4 1.0
CE F:LYS249 4.3 87.0 1.0
OE1 G:GLU95 4.4 106.4 1.0
CG G:ASP143 4.5 92.7 1.0
OD1 G:ASP143 4.6 97.2 1.0
O2G G:AGS402 4.9 110.0 1.0

Magnesium binding site 5 out of 11 in 8s7g

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Magnesium binding site 5 out of 11 in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg401

b:97.3
occ:1.00
 O2B H:AGS402 1.9 99.6 1.0
OG1 H:THR72 1.9 86.5 1.0
S1G H:AGS402 2.1 106.4 1.0
CB H:THR72 3.2 82.1 1.0
PB H:AGS402 3.3 84.6 1.0
PG H:AGS402 3.6 108.1 1.0
OD1 H:ASP143 3.6 92.2 1.0
O3A H:AGS402 3.7 88.2 1.0
O3B H:AGS402 3.9 91.4 1.0
CG2 H:THR72 4.1 75.9 1.0
N H:THR72 4.1 77.3 1.0
CA H:THR72 4.2 81.2 1.0
O3G H:AGS402 4.2 96.3 1.0
NZ G:LYS249 4.4 77.7 1.0
O1B H:AGS402 4.4 78.1 1.0
NZ H:LYS71 4.4 69.0 1.0
O1A H:AGS402 4.5 94.7 1.0
CG H:ASP143 4.6 99.4 1.0
OD2 H:ASP143 4.6 105.9 1.0
PA H:AGS402 4.7 93.2 1.0
CE G:LYS249 4.7 78.0 1.0
O2G H:AGS402 4.9 92.4 1.0

Magnesium binding site 6 out of 11 in 8s7g

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Magnesium binding site 6 out of 11 in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg401

b:106.5
occ:1.00
 OG1 I:THR72 1.8 90.5 1.0
S1G I:AGS402 2.3 99.8 1.0
OD1 I:ASP143 3.0 102.4 1.0
CB I:THR72 3.1 83.3 1.0
CG2 I:THR72 3.8 77.9 1.0
CG I:ASP143 4.0 107.0 1.0
CA I:THR72 4.2 75.4 1.0
O1B I:AGS402 4.2 88.0 1.0
PG I:AGS402 4.2 103.4 1.0
O3A I:AGS402 4.2 84.4 1.0
OD2 I:ASP143 4.3 111.3 1.0
N I:THR72 4.3 72.8 1.0
OE1 I:GLU95 4.4 92.4 1.0
NZ H:LYS249 4.4 86.9 1.0
O I:ASP143 4.6 108.2 1.0
PB I:AGS402 4.7 89.0 1.0
O I:ALA97 4.8 86.5 1.0
OE2 I:GLU95 4.8 95.9 1.0
O3G I:AGS402 4.9 96.0 1.0
O2G I:AGS402 5.0 91.2 1.0
CD I:GLU95 5.0 96.1 1.0

Magnesium binding site 7 out of 11 in 8s7g

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Magnesium binding site 7 out of 11 in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg401

b:105.7
occ:1.00
 O2B J:AGS402 1.8 101.3 1.0
OG1 J:THR72 1.8 102.8 1.0
S1G J:AGS402 2.6 104.0 1.0
PB J:AGS402 3.2 94.0 1.0
CB J:THR72 3.2 92.2 1.0
O3A J:AGS402 3.4 99.3 1.0
CG2 J:THR72 3.7 87.8 1.0
NZ I:LYS249 3.9 85.7 1.0
O3B J:AGS402 4.0 95.1 1.0
PG J:AGS402 4.0 114.7 1.0
O1B J:AGS402 4.2 93.1 1.0
CA J:THR72 4.2 86.3 1.0
N J:THR72 4.2 81.7 1.0
OD2 J:ASP143 4.3 90.8 1.0
OE2 J:GLU95 4.6 107.7 1.0
O2G J:AGS402 4.7 104.0 1.0
CE I:LYS249 4.8 79.2 1.0
PA J:AGS402 4.8 112.8 1.0
O1A J:AGS402 5.0 105.5 1.0

Magnesium binding site 8 out of 11 in 8s7g

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Magnesium binding site 8 out of 11 in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg401

b:109.8
occ:1.00
 OG1 K:THR72 1.8 99.5 1.0
O2G K:AGS402 1.9 113.6 1.0
O1B K:AGS402 2.5 121.1 1.0
CB K:THR72 3.2 98.0 1.0
PG K:AGS402 3.4 114.6 1.0
PB K:AGS402 3.5 117.1 1.0
OD2 K:ASP143 3.6 93.8 1.0
O2B K:AGS402 3.7 108.2 1.0
CG2 K:THR72 3.9 100.7 1.0
O3B K:AGS402 4.0 105.8 1.0
NZ J:LYS249 4.0 85.8 1.0
N K:THR72 4.2 97.5 1.0
CA K:THR72 4.2 99.0 1.0
O3G K:AGS402 4.3 111.3 1.0
CG K:ASP143 4.5 98.5 1.0
OD1 K:ASP143 4.5 100.5 1.0
S1G K:AGS402 4.5 115.8 1.0
O3A K:AGS402 4.9 113.4 1.0

Magnesium binding site 9 out of 11 in 8s7g

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Magnesium binding site 9 out of 11 in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg401

b:92.6
occ:1.00
 O2B L:AGS402 1.8 124.8 1.0
OG1 L:THR72 1.9 119.6 1.0
OD2 L:ASP143 2.6 105.4 1.0
PB L:AGS402 3.0 133.3 1.0
CB L:THR72 3.1 115.5 1.0
CG2 L:THR72 3.3 115.6 1.0
O1B L:AGS402 3.4 124.5 1.0
CG L:ASP143 3.6 114.4 1.0
OD1 L:ASP143 3.8 116.9 1.0
O3A L:AGS402 3.9 119.5 1.0
O3B L:AGS402 4.1 118.7 1.0
CA L:THR72 4.2 114.7 1.0
NZ K:LYS249 4.3 94.0 1.0
N L:THR72 4.5 110.3 1.0
O L:ALA97 4.9 109.7 1.0
CE K:LYS249 4.9 93.6 1.0
CB L:ASP143 4.9 110.8 1.0

Magnesium binding site 10 out of 11 in 8s7g

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Magnesium binding site 10 out of 11 in the Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Pseudomonas Aeruginosa Recombinase A (Reca) in Complex with LEXAS125A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:211.4
occ:1.00
 OG1 C:THR72 1.7 201.9 1.0
O3G C:AGS402 2.4 225.3 1.0
S1G C:AGS402 2.5 230.6 1.0
PG C:AGS402 2.8 227.6 1.0
OD2 C:ASP143 2.9 198.2 1.0
O2B C:AGS402 3.0 227.2 1.0
CB C:THR72 3.2 200.4 1.0
O3B C:AGS402 3.4 225.2 1.0
OD1 C:ASP143 3.5 201.5 1.0
CG C:ASP143 3.6 200.4 1.0
CG2 C:THR72 3.9 200.5 1.0
PB C:AGS402 3.9 227.7 1.0
CA C:THR72 4.1 199.9 1.0
N C:THR72 4.2 199.8 1.0
O2G C:AGS402 4.3 227.3 1.0
OE2 C:GLU95 4.5 200.5 1.0
O3A C:AGS402 4.8 229.3 1.0
O1B C:AGS402 5.0 224.8 1.0

Reference:

F.Vascon, S.De Felice, M.Gasparotto, S.T.Huber, C.Catalano, M.Chinellato, R.Mezzetti, A.Grinzato, F.Filippini, L.Maso, A.J.Jakobi, L.Cendron. Snapshots of Pseudomonas Aeruginosa Sos Response Reveal Structural Requisites For Lexa Autoproteolysis Iscience 11726 2025.
ISSN: ESSN 2589-0042
DOI: 10.1016/J.ISCI.2024.111726
Page generated: Sat Feb 8 20:44:36 2025

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