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Magnesium in PDB 8s8b: Phenylalanyl-Trna Synthetase Domain Swap: Evolutionary Advantage?

Enzymatic activity of Phenylalanyl-Trna Synthetase Domain Swap: Evolutionary Advantage?

All present enzymatic activity of Phenylalanyl-Trna Synthetase Domain Swap: Evolutionary Advantage?:
6.1.1.20;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Phenylalanyl-Trna Synthetase Domain Swap: Evolutionary Advantage? (pdb code 8s8b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Phenylalanyl-Trna Synthetase Domain Swap: Evolutionary Advantage?, PDB code: 8s8b:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8s8b

Go back to Magnesium Binding Sites List in 8s8b
Magnesium binding site 1 out of 2 in the Phenylalanyl-Trna Synthetase Domain Swap: Evolutionary Advantage?


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Phenylalanyl-Trna Synthetase Domain Swap: Evolutionary Advantage? within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:30.0
occ:1.00
OE1 D:GLU366 2.3 70.4 1.0
OE2 A:GLU413 2.7 60.2 1.0
CD D:GLU366 3.5 70.4 1.0
CD A:GLU413 3.6 60.2 1.0
OE1 A:GLU413 3.8 60.2 1.0
OE2 D:GLU366 4.1 70.4 1.0
OD1 D:ASN71 4.2 71.8 1.0
OD2 D:ASP357 4.3 71.2 1.0
OD1 D:ASP367 4.5 71.4 1.0
OD1 D:ASP363 4.6 71.6 1.0
CG D:GLU366 4.6 70.4 1.0
CB D:GLU366 4.7 70.4 1.0
CB D:ASP363 4.8 71.6 1.0
O D:ASP363 4.8 71.6 1.0
CA D:ASP363 4.9 71.6 1.0
CG A:GLU413 4.9 60.2 1.0
CG D:ASP363 5.0 71.6 1.0

Magnesium binding site 2 out of 2 in 8s8b

Go back to Magnesium Binding Sites List in 8s8b
Magnesium binding site 2 out of 2 in the Phenylalanyl-Trna Synthetase Domain Swap: Evolutionary Advantage?


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Phenylalanyl-Trna Synthetase Domain Swap: Evolutionary Advantage? within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:30.0
occ:1.00
OE1 C:GLU366 2.4 70.4 1.0
OE2 B:GLU413 2.7 66.6 1.0
CD C:GLU366 3.6 70.4 1.0
CD B:GLU413 3.6 66.6 1.0
OE1 B:GLU413 3.8 66.6 1.0
OD1 C:ASN71 4.1 71.8 1.0
OE2 C:GLU366 4.2 70.4 1.0
OD2 C:ASP357 4.2 71.2 1.0
OD1 C:ASP367 4.6 71.4 1.0
OD1 C:ASP363 4.6 71.6 1.0
CG C:GLU366 4.7 70.4 1.0
CB C:ASP363 4.7 71.6 1.0
CB C:GLU366 4.8 70.4 1.0
O C:ASP363 4.9 71.6 1.0
CA C:ASP363 4.9 71.6 1.0
CG C:ASP363 4.9 71.6 1.0
CG B:GLU413 5.0 66.6 1.0

Reference:

A.Real-Hohn, J.J.Ross, V.Stefania, A.Burga, G.Dong. Phenylalanyl-Trna Synthetase Domain Swap: Evolutionary Advantage? To Be Published.
Page generated: Fri Aug 15 14:28:08 2025

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