Magnesium in PDB 8tef: Porx Primitive Monoclinic Crystal Form

The structure of Porx Primitive Monoclinic Crystal Form, PDB code: 8tef was solved by A.Saran, N.Zeytuni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.40 / 2.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	133.52, 57.517, 149.141, 90, 98.39, 90
R / Rfree (%)	17.7 / 22.2

The binding sites of Magnesium atom in the Porx Primitive Monoclinic Crystal Form (pdb code 8tef). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Porx Primitive Monoclinic Crystal Form, PDB code: 8tef:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Porx Primitive Monoclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Porx Primitive Monoclinic Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:29.7 occ:1.00 O A:HOH708 2.1 27.5 1.0 O A:ASN56 2.2 52.4 1.0 O1 A:SO4601 2.4 94.9 1.0 OD1 A:ASP11 2.5 77.5 1.0 OD2 A:ASP54 2.8 63.3 1.0 CG A:ASP11 3.2 63.2 1.0 C A:ASN56 3.4 56.5 1.0 OD2 A:ASP11 3.4 68.2 1.0 S A:SO4601 3.7 83.2 1.0 O3 A:SO4601 3.9 69.9 1.0 CG A:ASP54 4.0 64.0 1.0 CB A:ASN56 4.0 65.3 1.0 CA A:ASN56 4.2 60.1 1.0 O4 A:SO4601 4.4 73.0 1.0 N A:MET57 4.4 58.8 1.0 OE1 A:GLU12 4.4 63.6 1.0 OD1 A:ASP10 4.4 40.4 1.0 CG A:GLU12 4.4 65.6 1.0 N A:ASN56 4.6 57.0 1.0 CA A:MET57 4.6 63.4 1.0 CB A:ASP11 4.6 60.8 1.0 CD A:GLU12 4.6 66.7 1.0 O2 A:SO4601 4.6 69.5 1.0 CB A:ASP54 4.7 54.1 1.0 OD1 A:ASP54 4.8 75.7 1.0 N A:ASP11 4.8 53.0 1.0 CG A:MET57 5.0 67.7 1.0

Magnesium binding site 2 out of 4 in the Porx Primitive Monoclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Porx Primitive Monoclinic Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg605 b:25.6 occ:1.00 O B:HOH705 2.1 24.5 1.0 O B:ASN56 2.2 38.2 1.0 O1 B:SO4601 2.3 57.8 1.0 OD1 B:ASP11 2.3 47.4 1.0 OD1 B:ASP54 2.6 48.8 1.0 CG B:ASP11 3.3 37.7 1.0 C B:ASN56 3.4 43.1 1.0 OD2 B:ASP11 3.5 36.2 1.0 S B:SO4601 3.7 51.5 1.0 CG B:ASP54 3.8 54.5 1.0 CB B:ASN56 4.1 52.1 1.0 O3 B:SO4601 4.1 47.4 1.0 OE1 B:GLU12 4.2 48.2 1.0 CA B:ASN56 4.2 45.6 1.0 OD1 B:ASP10 4.2 30.7 1.0 N B:MET57 4.4 43.1 1.0 CG B:ASN56 4.5 54.9 1.0 N B:ASN56 4.5 43.8 1.0 CG B:GLU12 4.5 45.9 1.0 CD B:GLU12 4.5 49.1 1.0 O4 B:SO4601 4.5 51.4 1.0 O2 B:SO4601 4.5 44.6 1.0 CB B:ASP54 4.6 45.2 1.0 CB B:ASP11 4.7 35.6 1.0 CA B:MET57 4.7 48.4 1.0 CG B:MET57 4.7 54.5 1.0 OD2 B:ASP54 4.7 66.0 1.0 N B:ASP11 4.8 35.2 1.0 OD1 B:ASN56 4.9 57.5 1.0 ND2 B:ASN56 4.9 53.0 1.0 N B:GLU12 5.0 40.4 1.0

Magnesium binding site 3 out of 4 in the Porx Primitive Monoclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Porx Primitive Monoclinic Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg604 b:40.6 occ:1.00 O C:HOH701 2.1 30.9 1.0 O C:ASN56 2.1 49.4 1.0 OD2 C:ASP54 2.2 72.2 1.0 OD1 C:ASP11 2.3 49.0 1.0 O3 C:SO4602 2.5 70.9 1.0 CG C:ASP11 3.2 47.0 1.0 C C:ASN56 3.3 56.0 1.0 CG C:ASP54 3.3 76.6 1.0 OD2 C:ASP11 3.4 46.4 1.0 OD1 C:ASP54 3.9 88.9 1.0 S C:SO4602 3.9 69.9 1.0 OE1 C:GLU12 4.0 69.7 1.0 CB C:ASN56 4.2 64.9 1.0 CA C:ASN56 4.2 61.6 1.0 OD1 C:ASP10 4.2 33.5 1.0 N C:MET57 4.3 56.9 1.0 CG C:GLU12 4.3 58.8 1.0 CD C:GLU12 4.3 68.0 1.0 O1 C:SO4602 4.4 64.8 1.0 CG C:ASN56 4.5 67.9 1.0 CA C:MET57 4.5 61.8 1.0 N C:ASN56 4.5 54.3 1.0 O2 C:SO4602 4.5 64.0 1.0 CB C:ASP54 4.6 63.4 1.0 CB C:ASP11 4.6 45.6 1.0 OD1 C:ASN56 4.7 73.2 1.0 CG C:MET57 4.7 74.4 1.0 N C:ASP11 4.8 43.7 1.0 O4 C:SO4602 4.8 68.8 1.0 N C:GLU12 4.9 46.0 1.0

Magnesium binding site 4 out of 4 in the Porx Primitive Monoclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Porx Primitive Monoclinic Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg603 b:45.5 occ:1.00 O3 D:SO4602 2.0 126.2 1.0 OD2 D:ASP54 2.3 125.2 1.0 OD1 D:ASP11 2.4 88.9 1.0 O D:ASN56 2.4 70.9 1.0 OE2 D:GLU12 2.8 109.9 1.0 S D:SO4602 3.4 118.6 1.0 CG D:ASP11 3.4 86.3 1.0 CG D:ASP54 3.5 111.0 1.0 C D:ASN56 3.6 85.7 1.0 CD D:GLU12 3.7 110.1 1.0 OD2 D:ASP11 3.8 87.4 1.0 O4 D:SO4602 3.8 106.0 1.0 OD1 D:ASP10 3.8 84.8 1.0 O2 D:SO4602 4.1 121.8 1.0 CB D:ASP54 4.2 88.0 1.0 O1 D:SO4602 4.3 101.4 1.0 CB D:ASN56 4.4 88.7 1.0 CA D:ASN56 4.4 86.0 1.0 CG D:GLU12 4.4 107.4 1.0 OD1 D:ASP54 4.4 128.6 1.0 OE1 D:GLU12 4.5 108.4 1.0 N D:ASN56 4.6 80.2 1.0 N D:ASP11 4.6 83.6 1.0 N D:MET57 4.6 91.3 1.0 CG D:ASP10 4.7 78.4 1.0 CB D:ASP11 4.8 88.2 1.0 CG D:MET57 4.8 90.2 1.0 N D:GLU12 4.8 100.8 1.0 NZ D:LYS104 4.9 76.8 1.0 CA D:MET57 4.9 94.2 1.0 CB D:GLU12 5.0 102.8 1.0

A.Saran, N.Zeytuni. Porx Primitive Monoclinic Crystal Form To Be Published.