Magnesium in PDB 8thb: Structure of the Saccharomyces Cerevisiae Pcna Clamp Unloader ELG1-Rfc Complex

The binding sites of Magnesium atom in the Structure of the Saccharomyces Cerevisiae Pcna Clamp Unloader ELG1-Rfc Complex (pdb code 8thb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of the Saccharomyces Cerevisiae Pcna Clamp Unloader ELG1-Rfc Complex, PDB code: 8thb:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of the Saccharomyces Cerevisiae Pcna Clamp Unloader ELG1-Rfc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Saccharomyces Cerevisiae Pcna Clamp Unloader ELG1-Rfc Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:51.2 occ:1.00 OG1 B:THR56 2.4 63.2 1.0 S1G B:AGS401 2.8 82.6 1.0 O1B B:AGS401 3.1 57.1 1.0 O3G B:AGS401 3.1 73.1 1.0 OD1 B:ASP114 3.3 79.9 1.0 PG B:AGS401 3.6 81.8 1.0 CB B:THR56 3.8 59.5 1.0 CG B:ASP114 4.0 85.4 1.0 OD2 B:ASP114 4.2 89.7 1.0 OE2 B:GLU115 4.3 89.8 1.0 O3B B:AGS401 4.3 70.6 1.0 PB B:AGS401 4.3 62.6 1.0 N B:THR56 4.4 64.8 1.0 CG B:GLU115 4.5 81.9 1.0 CA B:THR56 4.5 56.3 1.0 NH1 C:ARG131 4.6 78.6 1.0 CB B:ALA143 4.6 54.3 1.0 NH2 C:ARG132 4.7 86.3 1.0 NH2 C:ARG131 4.7 83.4 1.0 CG2 B:THR56 4.7 59.4 1.0 CD B:GLU115 4.8 88.4 1.0 CE B:LYS55 4.8 49.4 1.0 O2G B:AGS401 4.9 60.6 1.0 N B:GLU115 4.9 71.6 1.0

Magnesium binding site 2 out of 3 in the Structure of the Saccharomyces Cerevisiae Pcna Clamp Unloader ELG1-Rfc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Saccharomyces Cerevisiae Pcna Clamp Unloader ELG1-Rfc Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:74.0 occ:1.00 OG1 C:THR60 2.4 72.0 1.0 OD2 C:ASP117 2.5 98.7 1.0 S1G C:AGS401 2.8 90.5 1.0 O2G C:AGS401 3.1 90.0 1.0 O1A C:AGS401 3.4 83.3 1.0 CB C:THR60 3.4 71.3 1.0 CG C:ASP117 3.5 96.6 1.0 PG C:AGS401 3.6 90.2 1.0 CG2 C:THR60 3.8 71.4 1.0 O1B C:AGS401 3.8 83.0 1.0 OD1 C:ASP117 3.8 98.1 1.0 O3B C:AGS401 4.5 84.4 1.0 PB C:AGS401 4.7 88.1 1.0 PA C:AGS401 4.7 89.4 1.0 CA C:THR60 4.8 73.7 1.0 O3G C:AGS401 4.8 83.4 1.0 NH2 C:ARG206 4.8 90.7 1.0 CB C:ASP117 4.9 92.3 1.0

Magnesium binding site 3 out of 3 in the Structure of the Saccharomyces Cerevisiae Pcna Clamp Unloader ELG1-Rfc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Saccharomyces Cerevisiae Pcna Clamp Unloader ELG1-Rfc Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:142.2 occ:1.00 OD2 D:ASP140 2.2 162.9 1.0 OG1 D:THR72 2.4 115.1 1.0 O2B D:AGS401 2.4 123.0 1.0 CG D:ASP140 2.4 162.5 1.0 O2G D:AGS401 2.5 124.3 1.0 OD1 D:ASP140 2.5 161.2 1.0 O1B D:AGS401 3.1 123.8 1.0 PB D:AGS401 3.2 124.2 1.0 CB D:ASP140 3.5 163.1 1.0 PG D:AGS401 3.6 132.7 1.0 CB D:THR72 3.7 114.8 1.0 O3B D:AGS401 3.9 125.2 1.0 O3G D:AGS401 4.0 124.1 1.0 CG2 D:THR72 4.2 115.9 1.0 O3A D:AGS401 4.5 122.2 1.0 CA D:THR72 4.8 114.4 1.0 N D:THR72 4.8 111.8 1.0 CA D:ASP140 4.9 162.4 1.0

F.Zheng, Y.N.Yao, R.Georgescu, M.E.O'donnell, H.Li. Structure of the Pcna Unloader ELG1-Rfc Sci Adv 2024.
ISSN: ESSN 2375-2548
DOI: 10.1126/SCIADV.ADL1739