Magnesium in PDB 8thc: Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to A Cracked Pcna

The binding sites of Magnesium atom in the Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to A Cracked Pcna (pdb code 8thc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to A Cracked Pcna, PDB code: 8thc:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to A Cracked Pcna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to A Cracked Pcna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:54.7 occ:1.00 OG1 B:THR56 2.2 56.4 1.0 O3G B:AGS401 2.7 41.5 1.0 O1B B:AGS401 2.8 41.5 1.0 S1G B:AGS401 2.9 41.5 1.0 PG B:AGS401 3.2 41.5 1.0 CB B:THR56 3.4 56.4 1.0 O3B B:AGS401 3.8 41.5 1.0 PB B:AGS401 3.9 41.5 1.0 O1A B:AGS401 4.0 41.5 1.0 CG2 B:THR56 4.3 56.4 1.0 NH2 C:ARG132 4.3 73.1 1.0 N B:THR56 4.3 56.4 1.0 CA B:THR56 4.4 56.4 1.0 NH1 C:ARG131 4.5 70.1 1.0 O3A B:AGS401 4.6 41.5 1.0 O2G B:AGS401 4.6 41.5 1.0 PA B:AGS401 4.8 41.5 1.0

Magnesium binding site 2 out of 3 in the Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to A Cracked Pcna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to A Cracked Pcna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:91.8 occ:1.00 OG1 C:THR60 2.1 90.5 1.0 S1G C:AGS401 2.5 108.1 1.0 CB C:THR60 3.2 90.5 1.0 O1B C:AGS401 3.3 108.1 1.0 CG2 C:THR60 3.5 90.5 1.0 O1A C:AGS401 3.7 108.1 1.0 O2G C:AGS401 3.8 108.1 1.0 PG C:AGS401 3.8 108.1 1.0 PB C:AGS401 4.3 108.1 1.0 CA C:THR60 4.5 90.5 1.0 O3B C:AGS401 4.5 108.1 1.0 O3A C:AGS401 4.6 108.1 1.0 CG C:ASP117 4.6 111.1 1.0 PA C:AGS401 4.7 108.1 1.0 CB C:ASP117 4.8 111.1 1.0 OD1 C:ASP117 4.8 111.1 1.0 N C:THR60 4.8 90.5 1.0 OD2 C:ASP117 4.9 111.1 1.0

Magnesium binding site 3 out of 3 in the Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to A Cracked Pcna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to A Cracked Pcna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:127.3 occ:1.00 O2B D:AGS401 2.2 127.9 1.0 OD2 D:ASP140 2.4 173.1 1.0 O2G D:AGS401 2.7 127.9 1.0 CG D:ASP140 2.9 173.1 1.0 OG1 D:THR72 3.0 129.5 1.0 O1B D:AGS401 3.1 127.9 1.0 OD1 D:ASP140 3.1 173.1 1.0 PB D:AGS401 3.1 127.9 1.0 PG D:AGS401 3.8 127.9 1.0 O3B D:AGS401 3.9 127.9 1.0 CB D:ASP140 4.1 173.1 1.0 NH1 D:ARG229 4.2 108.8 1.0 CB D:THR72 4.3 129.5 1.0 O3G D:AGS401 4.3 127.9 1.0 O3A D:AGS401 4.4 127.9 1.0 CG2 D:THR72 4.7 129.5 1.0 NH2 D:ARG229 4.8 108.8 1.0 CZ D:ARG229 5.0 108.8 1.0

F.Zheng, Y.N.Yao, R.Georgescu, M.E.O'donnell, H.Li. Structure of the Pcna Unloader ELG1-Rfc Sci Adv 2024.
ISSN: ESSN 2375-2548
DOI: 10.1126/SCIADV.ADL1739