Magnesium in PDB 8thd: Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to Pcna

The binding sites of Magnesium atom in the Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to Pcna (pdb code 8thd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to Pcna, PDB code: 8thd:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to Pcna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to Pcna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:9.5 occ:1.00 OG1 B:THR56 2.1 25.5 1.0 O1B B:AGS401 2.9 107.8 1.0 S1G B:AGS401 3.0 112.5 1.0 OD2 B:ASP114 3.1 58.6 1.0 NH2 C:ARG131 3.2 56.8 1.0 O3G B:AGS401 3.3 111.0 1.0 OD1 B:ASP114 3.4 50.5 1.0 CB B:THR56 3.4 27.9 1.0 CG B:ASP114 3.6 52.4 1.0 NH1 C:ARG131 3.7 50.8 1.0 PG B:AGS401 3.7 97.4 1.0 CZ C:ARG131 3.9 52.4 1.0 PB B:AGS401 4.1 91.2 1.0 CG2 B:THR56 4.1 28.5 1.0 O1A B:AGS401 4.3 114.9 1.0 O3B B:AGS401 4.3 105.6 1.0 CA B:THR56 4.5 24.5 1.0 N B:THR56 4.6 37.4 1.0 NH2 C:ARG132 4.7 54.9 1.0 O3A B:AGS401 4.8 107.7 1.0 OE2 B:GLU115 4.9 54.2 1.0 CG B:GLU115 4.9 46.8 1.0

Magnesium binding site 2 out of 3 in the Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to Pcna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to Pcna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:45.3 occ:1.00 OG1 C:THR60 2.3 46.8 1.0 S1G C:AGS401 2.5 77.4 1.0 CB C:THR60 3.3 40.3 1.0 O1B C:AGS401 3.6 68.8 1.0 CG2 C:THR60 3.6 48.9 1.0 O1A C:AGS401 3.9 79.9 1.0 PG C:AGS401 4.1 60.3 1.0 O2G C:AGS401 4.3 66.3 1.0 PB C:AGS401 4.5 55.0 1.0 CA C:THR60 4.7 46.8 1.0 O3A C:AGS401 4.7 62.9 1.0 OD1 C:ASP117 4.7 63.0 1.0 CG C:ASP117 4.7 56.7 1.0 O3B C:AGS401 4.8 62.8 1.0 NH2 C:ARG206 4.8 72.4 1.0 PA C:AGS401 4.9 65.5 1.0 CB C:ASP117 4.9 48.6 1.0 N C:THR60 5.0 53.3 1.0

Magnesium binding site 3 out of 3 in the Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to Pcna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Saccharomyces Cerevisiae Clamp Unloader ELG1-Rfc Bound to Pcna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:109.9 occ:1.00 OD2 D:ASP140 2.2 143.5 1.0 O2B D:AGS401 2.3 95.9 1.0 O2G D:AGS401 2.7 89.4 1.0 CG D:ASP140 2.7 142.5 1.0 OG1 D:THR72 3.0 80.7 1.0 OD1 D:ASP140 3.1 141.1 1.0 PB D:AGS401 3.4 99.7 1.0 O1B D:AGS401 3.6 91.6 1.0 PG D:AGS401 3.7 89.2 1.0 CB D:ASP140 3.7 142.7 1.0 O3G D:AGS401 3.9 94.7 1.0 O3B D:AGS401 4.1 95.0 1.0 CB D:THR72 4.3 81.4 1.0 O3A D:AGS401 4.6 91.2 1.0 CG2 D:THR72 4.8 83.4 1.0

F.Zheng, Y.N.Yao, R.Georgescu, M.E.O'donnell, H.Li. Structure of the Pcna Unloader ELG1-Rfc Sci Adv 2024.
ISSN: ESSN 2375-2548
DOI: 10.1126/SCIADV.ADL1739