Magnesium in PDB 8thy: Yeast Actin A167E Mutant Rabbit-Like
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Yeast Actin A167E Mutant Rabbit-Like
(pdb code 8thy). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
Yeast Actin A167E Mutant Rabbit-Like, PDB code: 8thy:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 8thy
Go back to
Magnesium Binding Sites List in 8thy
Magnesium binding site 1 out
of 5 in the Yeast Actin A167E Mutant Rabbit-Like
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Yeast Actin A167E Mutant Rabbit-Like within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:63.5
occ:1.00
|
O3B
|
A:ADP401
|
1.9
|
75.4
|
1.0
|
OD2
|
A:ASP11
|
2.3
|
81.0
|
1.0
|
PB
|
A:ADP401
|
2.3
|
75.4
|
1.0
|
O1B
|
A:ADP401
|
2.3
|
75.4
|
1.0
|
OD1
|
A:ASP11
|
2.7
|
81.0
|
1.0
|
NE2
|
A:GLN137
|
2.7
|
76.2
|
1.0
|
CG
|
A:ASP11
|
2.8
|
81.0
|
1.0
|
O2B
|
A:ADP401
|
3.1
|
75.4
|
1.0
|
NZ
|
A:LYS18
|
3.4
|
79.5
|
1.0
|
O3A
|
A:ADP401
|
3.8
|
75.4
|
1.0
|
CD
|
A:GLN137
|
3.9
|
76.2
|
1.0
|
CA
|
A:GLY13
|
3.9
|
79.1
|
1.0
|
O2A
|
A:ADP401
|
4.1
|
75.4
|
1.0
|
CB
|
A:ASP11
|
4.3
|
81.0
|
1.0
|
PA
|
A:ADP401
|
4.4
|
75.4
|
1.0
|
OE1
|
A:GLN137
|
4.5
|
76.2
|
1.0
|
CE
|
A:LYS18
|
4.5
|
79.5
|
1.0
|
O
|
A:ASP11
|
4.6
|
81.0
|
1.0
|
CD
|
A:LYS18
|
4.6
|
79.5
|
1.0
|
O1A
|
A:ADP401
|
4.6
|
75.4
|
1.0
|
N
|
A:SER14
|
4.7
|
75.8
|
1.0
|
CG2
|
A:VAL339
|
4.8
|
75.7
|
1.0
|
CB
|
A:VAL339
|
4.8
|
75.7
|
1.0
|
CG
|
A:GLN137
|
4.8
|
76.2
|
1.0
|
N
|
A:GLY13
|
4.8
|
79.1
|
1.0
|
O
|
A:MET16
|
4.8
|
79.1
|
1.0
|
C
|
A:GLY13
|
4.9
|
79.1
|
1.0
|
CG1
|
A:VAL339
|
4.9
|
75.7
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 8thy
Go back to
Magnesium Binding Sites List in 8thy
Magnesium binding site 2 out
of 5 in the Yeast Actin A167E Mutant Rabbit-Like
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Yeast Actin A167E Mutant Rabbit-Like within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:63.5
occ:1.00
|
O3B
|
B:ADP401
|
1.9
|
75.4
|
1.0
|
OD2
|
B:ASP11
|
2.3
|
81.0
|
1.0
|
PB
|
B:ADP401
|
2.3
|
75.4
|
1.0
|
O1B
|
B:ADP401
|
2.3
|
75.4
|
1.0
|
OD1
|
B:ASP11
|
2.7
|
81.0
|
1.0
|
NE2
|
B:GLN137
|
2.7
|
76.2
|
1.0
|
CG
|
B:ASP11
|
2.8
|
81.0
|
1.0
|
O2B
|
B:ADP401
|
3.1
|
75.4
|
1.0
|
NZ
|
B:LYS18
|
3.4
|
79.5
|
1.0
|
O3A
|
B:ADP401
|
3.8
|
75.4
|
1.0
|
CD
|
B:GLN137
|
3.9
|
76.2
|
1.0
|
CA
|
B:GLY13
|
3.9
|
79.1
|
1.0
|
O2A
|
B:ADP401
|
4.1
|
75.4
|
1.0
|
CB
|
B:ASP11
|
4.3
|
81.0
|
1.0
|
PA
|
B:ADP401
|
4.4
|
75.4
|
1.0
|
OE1
|
B:GLN137
|
4.5
|
76.2
|
1.0
|
CE
|
B:LYS18
|
4.5
|
79.5
|
1.0
|
O
|
B:ASP11
|
4.6
|
81.0
|
1.0
|
CD
|
B:LYS18
|
4.6
|
79.5
|
1.0
|
O1A
|
B:ADP401
|
4.6
|
75.4
|
1.0
|
N
|
B:SER14
|
4.7
|
75.8
|
1.0
|
CG2
|
B:VAL339
|
4.8
|
75.7
|
1.0
|
CB
|
B:VAL339
|
4.8
|
75.7
|
1.0
|
CG
|
B:GLN137
|
4.8
|
76.2
|
1.0
|
N
|
B:GLY13
|
4.8
|
79.1
|
1.0
|
O
|
B:MET16
|
4.8
|
79.1
|
1.0
|
C
|
B:GLY13
|
4.9
|
79.1
|
1.0
|
CG1
|
B:VAL339
|
4.9
|
75.7
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 8thy
Go back to
Magnesium Binding Sites List in 8thy
Magnesium binding site 3 out
of 5 in the Yeast Actin A167E Mutant Rabbit-Like
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Yeast Actin A167E Mutant Rabbit-Like within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:63.5
occ:1.00
|
O3B
|
C:ADP401
|
1.9
|
75.4
|
1.0
|
OD2
|
C:ASP11
|
2.3
|
81.0
|
1.0
|
PB
|
C:ADP401
|
2.3
|
75.4
|
1.0
|
O1B
|
C:ADP401
|
2.3
|
75.4
|
1.0
|
OD1
|
C:ASP11
|
2.7
|
81.0
|
1.0
|
NE2
|
C:GLN137
|
2.7
|
76.2
|
1.0
|
CG
|
C:ASP11
|
2.8
|
81.0
|
1.0
|
O2B
|
C:ADP401
|
3.1
|
75.4
|
1.0
|
NZ
|
C:LYS18
|
3.4
|
79.5
|
1.0
|
O3A
|
C:ADP401
|
3.8
|
75.4
|
1.0
|
CD
|
C:GLN137
|
3.9
|
76.2
|
1.0
|
CA
|
C:GLY13
|
3.9
|
79.1
|
1.0
|
O2A
|
C:ADP401
|
4.1
|
75.4
|
1.0
|
CB
|
C:ASP11
|
4.3
|
81.0
|
1.0
|
PA
|
C:ADP401
|
4.4
|
75.4
|
1.0
|
OE1
|
C:GLN137
|
4.5
|
76.2
|
1.0
|
CE
|
C:LYS18
|
4.5
|
79.5
|
1.0
|
O
|
C:ASP11
|
4.6
|
81.0
|
1.0
|
CD
|
C:LYS18
|
4.6
|
79.5
|
1.0
|
O1A
|
C:ADP401
|
4.6
|
75.4
|
1.0
|
N
|
C:SER14
|
4.7
|
75.8
|
1.0
|
CG2
|
C:VAL339
|
4.8
|
75.7
|
1.0
|
CB
|
C:VAL339
|
4.8
|
75.7
|
1.0
|
CG
|
C:GLN137
|
4.8
|
76.2
|
1.0
|
N
|
C:GLY13
|
4.8
|
79.1
|
1.0
|
O
|
C:MET16
|
4.8
|
79.1
|
1.0
|
C
|
C:GLY13
|
4.9
|
79.1
|
1.0
|
CG1
|
C:VAL339
|
4.9
|
75.7
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 8thy
Go back to
Magnesium Binding Sites List in 8thy
Magnesium binding site 4 out
of 5 in the Yeast Actin A167E Mutant Rabbit-Like
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Yeast Actin A167E Mutant Rabbit-Like within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:63.5
occ:1.00
|
O3B
|
D:ADP401
|
1.9
|
75.4
|
1.0
|
OD2
|
D:ASP11
|
2.3
|
81.0
|
1.0
|
PB
|
D:ADP401
|
2.3
|
75.4
|
1.0
|
O1B
|
D:ADP401
|
2.3
|
75.4
|
1.0
|
OD1
|
D:ASP11
|
2.7
|
81.0
|
1.0
|
NE2
|
D:GLN137
|
2.7
|
76.2
|
1.0
|
CG
|
D:ASP11
|
2.8
|
81.0
|
1.0
|
O2B
|
D:ADP401
|
3.1
|
75.4
|
1.0
|
NZ
|
D:LYS18
|
3.4
|
79.5
|
1.0
|
O3A
|
D:ADP401
|
3.8
|
75.4
|
1.0
|
CD
|
D:GLN137
|
3.9
|
76.2
|
1.0
|
CA
|
D:GLY13
|
3.9
|
79.1
|
1.0
|
O2A
|
D:ADP401
|
4.1
|
75.4
|
1.0
|
CB
|
D:ASP11
|
4.3
|
81.0
|
1.0
|
PA
|
D:ADP401
|
4.4
|
75.4
|
1.0
|
OE1
|
D:GLN137
|
4.5
|
76.2
|
1.0
|
CE
|
D:LYS18
|
4.5
|
79.5
|
1.0
|
O
|
D:ASP11
|
4.6
|
81.0
|
1.0
|
CD
|
D:LYS18
|
4.6
|
79.5
|
1.0
|
O1A
|
D:ADP401
|
4.6
|
75.4
|
1.0
|
N
|
D:SER14
|
4.7
|
75.8
|
1.0
|
CG2
|
D:VAL339
|
4.8
|
75.7
|
1.0
|
CB
|
D:VAL339
|
4.8
|
75.7
|
1.0
|
CG
|
D:GLN137
|
4.8
|
76.2
|
1.0
|
N
|
D:GLY13
|
4.8
|
79.1
|
1.0
|
O
|
D:MET16
|
4.8
|
79.1
|
1.0
|
C
|
D:GLY13
|
4.9
|
79.1
|
1.0
|
CG1
|
D:VAL339
|
4.9
|
75.7
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 8thy
Go back to
Magnesium Binding Sites List in 8thy
Magnesium binding site 5 out
of 5 in the Yeast Actin A167E Mutant Rabbit-Like
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Yeast Actin A167E Mutant Rabbit-Like within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg402
b:63.5
occ:1.00
|
O3B
|
E:ADP401
|
1.9
|
75.4
|
1.0
|
OD2
|
E:ASP11
|
2.3
|
81.0
|
1.0
|
PB
|
E:ADP401
|
2.3
|
75.4
|
1.0
|
O1B
|
E:ADP401
|
2.3
|
75.4
|
1.0
|
OD1
|
E:ASP11
|
2.7
|
81.0
|
1.0
|
NE2
|
E:GLN137
|
2.7
|
76.2
|
1.0
|
CG
|
E:ASP11
|
2.8
|
81.0
|
1.0
|
O2B
|
E:ADP401
|
3.1
|
75.4
|
1.0
|
NZ
|
E:LYS18
|
3.4
|
79.5
|
1.0
|
O3A
|
E:ADP401
|
3.8
|
75.4
|
1.0
|
CD
|
E:GLN137
|
3.9
|
76.2
|
1.0
|
CA
|
E:GLY13
|
3.9
|
79.1
|
1.0
|
O2A
|
E:ADP401
|
4.1
|
75.4
|
1.0
|
CB
|
E:ASP11
|
4.3
|
81.0
|
1.0
|
PA
|
E:ADP401
|
4.4
|
75.4
|
1.0
|
OE1
|
E:GLN137
|
4.5
|
76.2
|
1.0
|
CE
|
E:LYS18
|
4.5
|
79.5
|
1.0
|
O
|
E:ASP11
|
4.6
|
81.0
|
1.0
|
CD
|
E:LYS18
|
4.6
|
79.5
|
1.0
|
O1A
|
E:ADP401
|
4.6
|
75.4
|
1.0
|
N
|
E:SER14
|
4.7
|
75.8
|
1.0
|
CG2
|
E:VAL339
|
4.8
|
75.7
|
1.0
|
CB
|
E:VAL339
|
4.8
|
75.7
|
1.0
|
CG
|
E:GLN137
|
4.8
|
76.2
|
1.0
|
N
|
E:GLY13
|
4.8
|
79.1
|
1.0
|
O
|
E:MET16
|
4.8
|
79.1
|
1.0
|
C
|
E:GLY13
|
4.9
|
79.1
|
1.0
|
CG1
|
E:VAL339
|
4.9
|
75.7
|
1.0
|
|
Reference:
N.Volkmann,
D.Hanein.
Yeast Actin A167E Mutant Rabbit-Like To Be Published.
Page generated: Fri Oct 4 20:38:10 2024
|