Magnesium in PDB 8tmk: Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2C

The binding sites of Magnesium atom in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2C (pdb code 8tmk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2C, PDB code: 8tmk:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2C within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:54.3 occ:1.00 OD1 B:ASN314 2.1 63.7 1.0 CG B:ASN314 2.5 63.7 1.0 ND2 B:ASN314 2.6 63.7 1.0 ND2 A:ASN314 3.0 76.0 1.0 CG A:ASN314 3.7 76.0 1.0 CB B:ASN314 3.7 63.7 1.0 OD1 A:ASN314 3.9 76.0 1.0 CA B:ASN314 3.9 63.7 1.0 C B:MET313 4.0 57.2 1.0 N B:ASN314 4.0 63.7 1.0 O B:MET313 4.1 57.2 1.0 O C:GLY312 4.6 55.9 1.0 CA B:MET313 4.6 57.2 1.0 ND2 D:ASN314 4.8 79.3 1.0 N B:MET313 4.9 57.2 1.0 CB A:ASN314 4.9 76.0 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2C within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:27.9 occ:1.00 CA C:GLY309 4.9 48.1 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2C within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:38.9 occ:1.00 SD D:MET302 4.2 40.2 1.0 OG1 D:THR305 4.2 40.1 1.0 CG D:MET302 4.2 40.2 1.0 CG2 E:THR305 4.2 42.3 1.0 CG2 C:THR305 4.6 44.3 1.0 CB D:THR305 4.8 40.1 1.0 CE B:MET302 4.9 47.5 1.0 CG2 D:THR305 5.0 40.1 1.0

S.K.Erramilli, K.Nosol, K.Pietrzak-Lichwa, T.Li, P.Dutka, J.Hou, M.Zhao, E.Perozo, A.A.Kossiakoff. Structural Basis For Cora Channel Gating Using Conformation-Specific Synthetic Antibodies To Be Published.