Magnesium in PDB 8tml: Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B

The binding sites of Magnesium atom in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B (pdb code 8tml). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B, PDB code: 8tml:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:43.7 occ:1.00 N B:ASN314 3.2 84.8 1.0 O C:GLY312 3.6 68.1 1.0 O B:GLY312 3.6 68.1 1.0 CA C:GLY312 3.7 68.1 1.0 C B:MET313 3.7 76.8 1.0 CB B:ASN314 3.8 84.8 1.0 CA B:MET313 3.8 76.8 1.0 CG B:ASN314 3.8 84.8 1.0 OD1 B:ASN314 3.9 84.8 1.0 CA B:ASN314 4.1 84.8 1.0 C C:GLY312 4.1 68.1 1.0 ND2 B:ASN314 4.4 84.8 1.0 C B:GLY312 4.5 68.1 1.0 O B:MET313 4.6 76.8 1.0 N B:MET313 4.7 76.8 1.0 CB B:MET313 4.9 76.8 1.0 N C:GLY312 5.0 68.1 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:40.4 occ:1.00 CG2 B:THR305 3.4 54.4 1.0 OG1 A:THR305 3.8 56.1 1.0 CG2 A:THR305 4.4 56.1 1.0 O A:THR305 4.6 56.1 1.0 CB A:THR305 4.7 56.1 1.0 CB B:THR305 4.7 54.4 1.0 CG2 C:THR305 4.8 50.8 1.0 OG1 B:THR305 4.9 54.4 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg401 b:34.3 occ:1.00 SD D:MET302 4.1 45.7 1.0 SD E:MET302 4.2 54.1 1.0 CE E:MET302 4.4 54.1 1.0 CG2 E:THR305 4.5 52.9 1.0 CE C:MET302 4.6 47.3 1.0 CG A:MET302 4.9 57.2 1.0 CE D:MET302 4.9 45.7 1.0 CG2 A:THR305 4.9 56.1 1.0 OG1 E:THR305 5.0 52.9 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Magnesium Depleted Cora in Complex with Conformation-Specific Synthetic Antibody C18, State Mgd-2B within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:43.9 occ:1.00 CA E:GLY309 3.9 57.3 1.0 CA D:GLY309 4.0 54.2 1.0 O D:GLY309 4.4 54.2 1.0 N E:GLY309 4.4 57.3 1.0 O E:ALA308 4.5 55.5 1.0 C D:GLY309 4.7 54.2 1.0 C E:ALA308 4.7 55.5 1.0

S.K.Erramilli, K.Nosol, K.Pietrzak-Lichwa, T.Li, P.Dutka, J.Hou, M.Zhao, E.Perozo, A.A.Kossiakoff. Structural Basis For Cora Channel Gating Using Conformation-Specific Synthetic Antibodies To Be Published.