Magnesium in PDB 8u66: Firmicutes Rubisco

The binding sites of Magnesium atom in the Firmicutes Rubisco (pdb code 8u66). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Firmicutes Rubisco, PDB code: 8u66:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Firmicutes Rubisco


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Firmicutes Rubisco within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:30.0 occ:1.00 OD1 A:ASP189 1.9 39.6 1.0 O3 A:CAP502 2.0 20.0 1.0 OE1 A:GLU190 2.1 32.6 1.0 O2 A:CAP502 2.3 20.0 1.0 OQ2 A:KCX187 2.6 20.0 1.0 O7 A:CAP502 2.7 20.0 1.0 C2 A:CAP502 2.9 20.0 1.0 C3 A:CAP502 2.9 20.0 1.0 OQ1 A:KCX187 3.0 20.0 1.0 CG A:ASP189 3.1 31.7 1.0 CD A:GLU190 3.2 29.3 1.0 CX A:KCX187 3.2 20.0 1.0 C A:CAP502 3.2 20.0 1.0 NE2 A:HIS280 3.6 24.5 1.0 OE2 A:GLU190 3.7 35.4 1.0 OD2 A:ASP189 3.8 36.7 1.0 N A:GLU190 3.8 20.1 1.0 CG2 A:THR159 3.9 17.9 1.0 ND2 B:ASN109 3.9 41.0 1.0 CA A:ASP189 4.1 23.2 1.0 OG1 A:THR159 4.1 31.8 1.0 NZ A:LYS161 4.2 26.5 1.0 CB A:ASP189 4.2 31.1 1.0 C4 A:CAP502 4.2 20.0 1.0 NZ A:LYS163 4.3 28.4 1.0 CD2 A:HIS280 4.3 23.1 1.0 C1 A:CAP502 4.4 20.0 1.0 CG A:GLU190 4.4 29.9 1.0 O6 A:CAP502 4.4 20.0 1.0 C A:ASP189 4.5 26.6 1.0 NZ A:KCX187 4.5 20.0 1.0 CB A:GLU190 4.5 28.5 1.0 CB A:THR159 4.5 20.3 1.0 CE1 A:HIS280 4.6 19.4 1.0 CA A:GLU190 4.8 22.5 1.0 C5 A:CAP502 4.9 20.0 1.0 O1 A:CAP502 4.9 20.0 1.0

Magnesium binding site 2 out of 8 in the Firmicutes Rubisco


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Firmicutes Rubisco within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:30.0 occ:1.00 OD1 B:ASP189 1.9 39.6 1.0 OE1 B:GLU190 2.0 32.6 1.0 O3 B:CAP502 2.0 20.0 1.0 O2 B:CAP502 2.4 20.0 1.0 OQ1 B:KCX187 2.6 20.0 1.0 O6 B:CAP502 2.7 20.0 1.0 C3 B:CAP502 3.0 20.0 1.0 C2 B:CAP502 3.0 20.0 1.0 OQ2 B:KCX187 3.1 20.0 1.0 CD B:GLU190 3.1 29.3 1.0 CG B:ASP189 3.1 31.7 1.0 C B:CAP502 3.2 20.0 1.0 CX B:KCX187 3.2 20.0 1.0 OE2 B:GLU190 3.6 35.4 1.0 NE2 B:HIS280 3.6 24.5 1.0 OD2 B:ASP189 3.8 36.7 1.0 N B:GLU190 3.8 20.1 1.0 ND2 A:ASN109 3.8 41.0 1.0 CG2 B:THR159 4.0 17.9 1.0 CA B:ASP189 4.1 23.2 1.0 CB B:ASP189 4.2 31.1 1.0 NZ B:LYS161 4.2 26.5 1.0 NZ B:LYS163 4.2 28.4 1.0 C4 B:CAP502 4.2 20.0 1.0 OG1 B:THR159 4.2 31.8 1.0 CD2 B:HIS280 4.3 23.1 1.0 CG B:GLU190 4.3 29.9 1.0 O7 B:CAP502 4.4 20.0 1.0 C1 B:CAP502 4.4 20.0 1.0 CB B:GLU190 4.5 28.5 1.0 C B:ASP189 4.5 26.6 1.0 NZ B:KCX187 4.5 20.0 1.0 CE1 B:HIS280 4.6 19.4 1.0 CB B:THR159 4.6 20.3 1.0 CA B:GLU190 4.8 22.5 1.0 C5 B:CAP502 4.8 20.0 1.0 O1 B:CAP502 5.0 20.0 1.0

Magnesium binding site 3 out of 8 in the Firmicutes Rubisco


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Firmicutes Rubisco within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg501 b:30.0 occ:1.00 OD1 C:ASP189 1.9 39.6 1.0 OE1 C:GLU190 2.0 32.6 1.0 O3 C:CAP502 2.0 20.0 1.0 O2 C:CAP502 2.4 20.0 1.0 OQ1 C:KCX187 2.6 20.0 1.0 O6 C:CAP502 2.7 20.0 1.0 C3 C:CAP502 3.0 20.0 1.0 C2 C:CAP502 3.0 20.0 1.0 OQ2 C:KCX187 3.0 20.0 1.0 CD C:GLU190 3.1 29.3 1.0 CG C:ASP189 3.1 31.7 1.0 C C:CAP502 3.2 20.0 1.0 CX C:KCX187 3.2 20.0 1.0 NE2 C:HIS280 3.6 24.5 1.0 OE2 C:GLU190 3.6 35.4 1.0 N C:GLU190 3.8 20.1 1.0 OD2 C:ASP189 3.8 36.7 1.0 ND2 D:ASN109 3.9 41.0 1.0 CG2 C:THR159 4.0 17.9 1.0 CA C:ASP189 4.1 23.2 1.0 CB C:ASP189 4.2 31.1 1.0 NZ C:LYS161 4.2 26.5 1.0 OG1 C:THR159 4.2 31.8 1.0 NZ C:LYS163 4.2 28.4 1.0 C4 C:CAP502 4.2 20.0 1.0 CD2 C:HIS280 4.3 23.1 1.0 CG C:GLU190 4.3 29.9 1.0 O7 C:CAP502 4.4 20.0 1.0 C1 C:CAP502 4.4 20.0 1.0 CB C:GLU190 4.5 28.5 1.0 C C:ASP189 4.5 26.6 1.0 NZ C:KCX187 4.5 20.0 1.0 CE1 C:HIS280 4.6 19.4 1.0 CB C:THR159 4.6 20.3 1.0 CA C:GLU190 4.8 22.5 1.0 C5 C:CAP502 4.9 20.0 1.0 O1 C:CAP502 5.0 20.0 1.0

Magnesium binding site 4 out of 8 in the Firmicutes Rubisco


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Firmicutes Rubisco within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg501 b:30.0 occ:1.00 OD1 D:ASP189 1.9 39.6 1.0 OE1 D:GLU190 2.2 32.6 1.0 O3 D:CAP502 2.2 20.0 1.0 O2 D:CAP502 2.6 20.0 1.0 OQ2 D:KCX187 2.6 20.0 1.0 OQ1 D:KCX187 2.6 20.0 1.0 CX D:KCX187 2.9 20.0 1.0 CG D:ASP189 3.2 31.7 1.0 C3 D:CAP502 3.2 20.0 1.0 O7 D:CAP502 3.3 20.0 1.0 C2 D:CAP502 3.3 20.0 1.0 CD D:GLU190 3.3 29.3 1.0 N D:GLU190 3.5 20.1 1.0 NE2 D:HIS280 3.5 24.5 1.0 CG2 D:THR159 3.7 17.9 1.0 C D:CAP502 3.8 20.0 1.0 CA D:ASP189 3.8 23.2 1.0 OG1 D:THR159 3.9 31.8 1.0 OE2 D:GLU190 4.0 35.4 1.0 OD2 D:ASP189 4.0 36.7 1.0 CD2 D:HIS280 4.0 23.1 1.0 CB D:ASP189 4.1 31.1 1.0 C D:ASP189 4.2 26.6 1.0 NZ D:KCX187 4.3 20.0 1.0 CB D:GLU190 4.4 28.5 1.0 ND2 C:ASN109 4.4 41.0 1.0 CB D:THR159 4.4 20.3 1.0 CG D:GLU190 4.4 29.9 1.0 NZ D:LYS161 4.5 26.5 1.0 CA D:GLU190 4.5 22.5 1.0 C4 D:CAP502 4.6 20.0 1.0 CE1 D:HIS280 4.6 19.4 1.0 C1 D:CAP502 4.7 20.0 1.0 NZ D:LYS163 4.7 28.4 1.0 O D:ASP188 4.8 33.8 1.0 N D:ASP189 4.9 23.2 1.0 O6 D:CAP502 5.0 20.0 1.0

Magnesium binding site 5 out of 8 in the Firmicutes Rubisco


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Firmicutes Rubisco within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg501 b:30.0 occ:1.00 OD1 E:ASP189 1.9 39.6 1.0 O3 E:CAP502 2.0 20.0 1.0 OE1 E:GLU190 2.1 32.6 1.0 O2 E:CAP502 2.2 20.0 1.0 OQ2 E:KCX187 2.3 20.0 1.0 O7 E:CAP502 2.6 20.0 1.0 C2 E:CAP502 2.9 20.0 1.0 C3 E:CAP502 2.9 20.0 1.0 OQ1 E:KCX187 3.1 20.0 1.0 CG E:ASP189 3.1 31.7 1.0 CX E:KCX187 3.1 20.0 1.0 C E:CAP502 3.1 20.0 1.0 CD E:GLU190 3.2 29.3 1.0 NE2 E:HIS280 3.7 24.5 1.0 OE2 E:GLU190 3.7 35.4 1.0 OD2 E:ASP189 3.8 36.7 1.0 N E:GLU190 3.9 20.1 1.0 CG2 E:THR159 3.9 17.9 1.0 ND2 F:ASN109 3.9 41.0 1.0 NZ E:LYS161 4.1 26.5 1.0 OG1 E:THR159 4.1 31.8 1.0 CA E:ASP189 4.1 23.2 1.0 CB E:ASP189 4.2 31.1 1.0 C4 E:CAP502 4.2 20.0 1.0 NZ E:LYS163 4.2 28.4 1.0 C1 E:CAP502 4.3 20.0 1.0 O6 E:CAP502 4.4 20.0 1.0 CD2 E:HIS280 4.4 23.1 1.0 NZ E:KCX187 4.4 20.0 1.0 CG E:GLU190 4.4 29.9 1.0 CB E:THR159 4.5 20.3 1.0 C E:ASP189 4.6 26.6 1.0 CB E:GLU190 4.6 28.5 1.0 CE1 E:HIS280 4.7 19.4 1.0 O1 E:CAP502 4.9 20.0 1.0 C5 E:CAP502 4.9 20.0 1.0 CA E:GLU190 4.9 22.5 1.0

Magnesium binding site 6 out of 8 in the Firmicutes Rubisco


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Firmicutes Rubisco within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg501 b:30.0 occ:1.00 OD1 F:ASP189 1.9 39.6 1.0 OE1 F:GLU190 2.2 32.6 1.0 O3 F:CAP502 2.2 20.0 1.0 OQ1 F:KCX187 2.6 20.0 1.0 O2 F:CAP502 2.6 20.0 1.0 OQ2 F:KCX187 2.7 20.0 1.0 CX F:KCX187 3.0 20.0 1.0 CG F:ASP189 3.2 31.7 1.0 C3 F:CAP502 3.2 20.0 1.0 O6 F:CAP502 3.3 20.0 1.0 C2 F:CAP502 3.3 20.0 1.0 CD F:GLU190 3.3 29.3 1.0 N F:GLU190 3.5 20.1 1.0 NE2 F:HIS280 3.5 24.5 1.0 CG2 F:THR159 3.7 17.9 1.0 CA F:ASP189 3.8 23.2 1.0 C F:CAP502 3.8 20.0 1.0 OG1 F:THR159 3.9 31.8 1.0 CD2 F:HIS280 4.0 23.1 1.0 OE2 F:GLU190 4.0 35.4 1.0 OD2 F:ASP189 4.0 36.7 1.0 CB F:ASP189 4.1 31.1 1.0 C F:ASP189 4.2 26.6 1.0 NZ F:KCX187 4.3 20.0 1.0 CB F:GLU190 4.4 28.5 1.0 ND2 E:ASN109 4.4 41.0 1.0 CB F:THR159 4.4 20.3 1.0 CG F:GLU190 4.4 29.9 1.0 NZ F:LYS161 4.5 26.5 1.0 CA F:GLU190 4.5 22.5 1.0 C4 F:CAP502 4.6 20.0 1.0 CE1 F:HIS280 4.6 19.4 1.0 C1 F:CAP502 4.7 20.0 1.0 NZ F:LYS163 4.8 28.4 1.0 O F:ASP188 4.8 33.8 1.0 N F:ASP189 4.9 23.2 1.0 O7 F:CAP502 5.0 20.0 1.0

Magnesium binding site 7 out of 8 in the Firmicutes Rubisco


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Firmicutes Rubisco within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg501 b:30.0 occ:1.00 OD1 G:ASP189 1.9 39.6 1.0 OE1 G:GLU190 1.9 32.6 1.0 O3 G:CAP502 2.0 20.0 1.0 O2 G:CAP502 2.4 20.0 1.0 OQ1 G:KCX187 2.6 20.0 1.0 O6 G:CAP502 2.7 20.0 1.0 C3 G:CAP502 3.0 20.0 1.0 C2 G:CAP502 3.0 20.0 1.0 OQ2 G:KCX187 3.1 20.0 1.0 CD G:GLU190 3.1 29.3 1.0 CG G:ASP189 3.1 31.7 1.0 C G:CAP502 3.2 20.0 1.0 CX G:KCX187 3.2 20.0 1.0 OE2 G:GLU190 3.6 35.4 1.0 NE2 G:HIS280 3.6 24.5 1.0 OD2 G:ASP189 3.8 36.7 1.0 N G:GLU190 3.8 20.1 1.0 ND2 H:ASN109 3.9 41.0 1.0 CG2 G:THR159 4.0 17.9 1.0 CA G:ASP189 4.1 23.2 1.0 CB G:ASP189 4.2 31.1 1.0 NZ G:LYS163 4.2 28.4 1.0 NZ G:LYS161 4.2 26.5 1.0 C4 G:CAP502 4.2 20.0 1.0 OG1 G:THR159 4.2 31.8 1.0 CG G:GLU190 4.3 29.9 1.0 CD2 G:HIS280 4.3 23.1 1.0 O7 G:CAP502 4.4 20.0 1.0 C1 G:CAP502 4.4 20.0 1.0 CB G:GLU190 4.5 28.5 1.0 C G:ASP189 4.5 26.6 1.0 NZ G:KCX187 4.5 20.0 1.0 CE1 G:HIS280 4.6 19.4 1.0 CB G:THR159 4.7 20.3 1.0 CA G:GLU190 4.8 22.5 1.0 C5 G:CAP502 4.8 20.0 1.0 O1 G:CAP502 5.0 20.0 1.0

Magnesium binding site 8 out of 8 in the Firmicutes Rubisco


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Firmicutes Rubisco within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg501 b:30.0 occ:1.00 OD1 H:ASP189 1.9 39.6 1.0 OE1 H:GLU190 2.0 32.6 1.0 O3 H:CAP502 2.0 20.0 1.0 O2 H:CAP502 2.4 20.0 1.0 OQ2 H:KCX187 2.6 20.0 1.0 O7 H:CAP502 2.7 20.0 1.0 C3 H:CAP502 3.0 20.0 1.0 C2 H:CAP502 3.0 20.0 1.0 OQ1 H:KCX187 3.1 20.0 1.0 CD H:GLU190 3.1 29.3 1.0 CG H:ASP189 3.1 31.7 1.0 C H:CAP502 3.2 20.0 1.0 CX H:KCX187 3.2 20.0 1.0 NE2 H:HIS280 3.6 24.5 1.0 OE2 H:GLU190 3.6 35.4 1.0 OD2 H:ASP189 3.8 36.7 1.0 N H:GLU190 3.8 20.1 1.0 ND2 G:ASN109 3.9 41.0 1.0 CG2 H:THR159 4.0 17.9 1.0 CA H:ASP189 4.1 23.2 1.0 CB H:ASP189 4.2 31.1 1.0 NZ H:LYS161 4.2 26.5 1.0 NZ H:LYS163 4.2 28.4 1.0 OG1 H:THR159 4.2 31.8 1.0 C4 H:CAP502 4.2 20.0 1.0 CD2 H:HIS280 4.3 23.1 1.0 CG H:GLU190 4.3 29.9 1.0 O6 H:CAP502 4.4 20.0 1.0 C1 H:CAP502 4.4 20.0 1.0 CB H:GLU190 4.5 28.5 1.0 C H:ASP189 4.5 26.6 1.0 NZ H:KCX187 4.5 20.0 1.0 CE1 H:HIS280 4.6 19.4 1.0 CB H:THR159 4.6 20.3 1.0 CA H:GLU190 4.8 22.5 1.0 C5 H:CAP502 4.8 20.0 1.0 O1 H:CAP502 5.0 20.0 1.0

B.P.Kaeser, A.K.Liu. Deep-Branching Evolutionary Intermediates Reveal Structural Origins of Form I Rubisco To Be Published.