Magnesium in PDB 8u8v: Cryo-Em Structure of Substrate Atp Bound in the Insertion Site (Is) of Human Mitochondrial Transcription Elongation Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of Substrate Atp Bound in the Insertion Site (Is) of Human Mitochondrial Transcription Elongation Complex (pdb code 8u8v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Substrate Atp Bound in the Insertion Site (Is) of Human Mitochondrial Transcription Elongation Complex, PDB code: 8u8v:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Substrate Atp Bound in the Insertion Site (Is) of Human Mitochondrial Transcription Elongation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Substrate Atp Bound in the Insertion Site (Is) of Human Mitochondrial Transcription Elongation Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1302 b:30.0 occ:1.00 OD2 E:ASP1151 2.1 124.5 1.0 O2A E:APC1301 2.1 22.8 1.0 O E:GLY923 2.2 134.7 1.0 O2B E:APC1301 2.4 20.7 1.0 OD2 E:ASP922 2.8 30.0 1.0 C E:GLY923 3.3 135.5 1.0 CG E:ASP1151 3.3 124.5 1.0 PA E:APC1301 3.3 21.9 1.0 O E:SER924 3.4 138.5 1.0 C3A E:APC1301 3.4 23.6 1.0 PB E:APC1301 3.5 20.0 1.0 CG E:ASP922 3.6 30.0 1.0 OD1 E:ASP922 3.7 30.0 1.0 C E:SER924 3.9 137.4 1.0 OD1 E:ASP1151 4.0 124.6 1.0 N E:GLY923 4.0 133.2 1.0 O1A E:APC1301 4.0 13.6 1.0 CA E:GLY923 4.1 134.8 1.0 O1B E:APC1301 4.2 26.2 1.0 N E:SER924 4.2 136.0 1.0 CB E:ASP1151 4.3 124.5 1.0 CA E:SER924 4.5 136.9 1.0 O5' E:APC1301 4.5 15.4 1.0 C5' E:APC1301 4.6 19.2 1.0 N E:CYS925 4.6 138.0 1.0 O3B E:APC1301 4.8 33.2 1.0 O3' R:C9 4.8 148.9 1.0 CA E:CYS925 4.9 138.4 1.0 CB E:ASP922 4.9 30.0 1.0 O2G E:APC1301 4.9 23.7 1.0 C E:ASP922 5.0 129.9 1.0

K.Herbine, A.R.Nayak, D.Temiakov. Structural Basis For Substrate Binding and Selection By Human Mitochondrial Rna Polymerase. Nat Commun V. 15 7134 2024.
ISSN: ESSN 2041-1723
PubMed: 39164235
DOI: 10.1038/S41467-024-50817-9