Magnesium in PDB 8ub7: Diversity-Generating Retroelement (Dgr) Ribonucleoprotein Reverse Transcriptase - Active State (N-Occupied)

The binding sites of Magnesium atom in the Diversity-Generating Retroelement (Dgr) Ribonucleoprotein Reverse Transcriptase - Active State (N-Occupied) (pdb code 8ub7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Diversity-Generating Retroelement (Dgr) Ribonucleoprotein Reverse Transcriptase - Active State (N-Occupied), PDB code: 8ub7:

Magnesium binding site 1 out of 1 in the Diversity-Generating Retroelement (Dgr) Ribonucleoprotein Reverse Transcriptase - Active State (N-Occupied)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Diversity-Generating Retroelement (Dgr) Ribonucleoprotein Reverse Transcriptase - Active State (N-Occupied) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:131.3 occ:1.00 OD2 A:ASP215 2.2 157.0 1.0 OD1 A:ASP138 2.3 178.7 1.0 O A:PHE139 2.3 86.1 1.0 O3B A:DCP401 2.5 249.0 1.0 O2G A:DCP401 2.8 248.6 1.0 PG A:DCP401 3.0 263.1 1.0 O2A A:DCP401 3.3 199.1 1.0 O3G A:DCP401 3.3 265.2 1.0 CG A:ASP138 3.4 142.2 1.0 C A:PHE139 3.4 84.9 1.0 O A:SER140 3.5 156.9 1.0 CG A:ASP215 3.5 125.2 1.0 O2B A:DCP401 3.5 171.4 1.0 PB A:DCP401 3.5 222.7 1.0 OD2 A:ASP138 3.8 121.9 1.0 N A:PHE139 4.0 81.1 1.0 C A:SER140 4.1 127.6 1.0 O3A A:DCP401 4.2 231.1 1.0 CA A:PHE139 4.3 84.9 1.0 CB A:ASP215 4.3 90.8 1.0 OG A:SER247 4.4 112.2 1.0 OD1 A:ASP215 4.4 125.0 1.0 PA A:DCP401 4.4 210.6 1.0 N A:SER140 4.4 95.2 1.0 O1G A:DCP401 4.5 262.0 1.0 CA A:SER140 4.6 118.0 1.0 CB A:ASP138 4.6 110.2 1.0 C A:ASP138 4.7 83.6 1.0 O1B A:DCP401 4.9 227.7 1.0 N A:LYS141 5.0 106.8 1.0 N A:PHE142 5.0 103.1 1.0

S.Handa, T.Biswas, P.Ghosh. Structural Requirements For Reverse Transcription By A Diversity-Generating Retroelement To Be Published.