Magnesium in PDB 8uee: Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em

The binding sites of Magnesium atom in the Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em (pdb code 8uee). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em, PDB code: 8uee:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:94.5 occ:1.00 O4 F:PO4403 2.0 117.4 1.0 O1B F:ADP401 2.1 104.2 1.0 NE2 F:GLN137 2.5 101.8 1.0 O2 F:PO4403 2.5 121.8 1.0 P F:PO4403 2.7 131.5 1.0 PB F:ADP401 3.3 110.3 1.0 O2B F:ADP401 3.6 107.0 1.0 O1 F:PO4403 3.6 117.8 1.0 O F:HOH501 3.6 78.3 1.0 CD F:GLN137 3.8 100.3 1.0 OD2 F:ASP11 3.9 112.3 1.0 O3 F:PO4403 3.9 120.8 1.0 O3A F:ADP401 4.1 95.4 1.0 OD1 F:ASP11 4.2 115.5 1.0 O1A F:ADP401 4.4 103.9 1.0 O3B F:ADP401 4.5 104.2 1.0 CG F:ASP11 4.5 115.2 1.0 NZ F:LYS18 4.5 111.2 1.0 O F:ASN12 4.6 110.1 1.0 OE1 F:GLN137 4.6 103.0 1.0 CG F:GLN137 4.7 93.2 1.0 CA F:GLY13 4.7 111.3 1.0 OD1 F:ASP154 4.8 90.5 1.0 CE F:LYS18 4.8 108.1 1.0 CG2 F:VAL339 4.8 94.7 1.0 PA F:ADP401 4.8 94.0 1.0

Magnesium binding site 2 out of 7 in the Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg402 b:81.0 occ:1.00 O2 H:PO4403 1.9 108.3 1.0 O1B H:ADP401 1.9 83.9 1.0 PB H:ADP401 2.7 82.5 1.0 O2B H:ADP401 3.1 88.2 1.0 O3B H:ADP401 3.3 75.3 1.0 P H:PO4403 3.3 121.1 1.0 O1 H:PO4403 3.9 110.9 1.0 OE1 H:GLN137 3.9 94.8 1.0 O3 H:PO4403 4.0 106.1 1.0 CA H:GLY13 4.1 88.9 1.0 OD2 H:ASP11 4.2 89.3 1.0 O3A H:ADP401 4.2 71.0 1.0 CD H:GLN137 4.3 81.2 1.0 NZ H:LYS18 4.3 78.1 1.0 O4 H:PO4403 4.3 112.5 1.0 OD2 H:ASP154 4.4 88.6 1.0 NE2 H:GLN137 4.5 76.7 1.0 OD1 H:ASP11 4.5 88.1 1.0 CA H:GLY156 4.7 76.8 1.0 CG H:ASP11 4.8 87.6 1.0 N H:SER14 4.9 73.3 1.0 N H:GLY13 5.0 86.1 1.0

Magnesium binding site 3 out of 7 in the Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg402 b:69.5 occ:1.00 O1B I:ADP401 2.0 84.0 1.0 O2 I:PO4403 2.7 104.3 1.0 PB I:ADP401 2.9 94.8 1.0 O3B I:ADP401 3.2 85.7 1.0 O2B I:ADP401 3.5 81.2 1.0 OD2 I:ASP11 3.6 81.7 1.0 NZ I:LYS18 4.0 68.2 1.0 OD1 I:ASP11 4.1 87.6 1.0 P I:PO4403 4.1 117.9 1.0 CG I:ASP11 4.3 82.3 1.0 O3A I:ADP401 4.3 80.8 1.0 OE1 I:GLN137 4.3 92.1 1.0 O3 I:PO4403 4.5 108.8 1.0 CA I:GLY13 4.5 67.0 1.0 OD1 I:ASP154 4.5 93.1 1.0 CD I:GLN137 4.6 83.8 1.0 CG2 I:VAL339 4.7 72.4 1.0 O1A I:ADP401 4.7 68.7 1.0 O1 I:PO4403 4.7 108.5 1.0 NE2 I:GLN137 4.8 75.6 1.0 PA I:ADP401 5.0 82.2 1.0

Magnesium binding site 4 out of 7 in the Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg402 b:82.0 occ:1.00 O1B J:ADP401 1.9 89.2 1.0 PB J:ADP401 2.8 93.1 1.0 O2 J:PO4403 2.8 91.6 1.0 O3B J:ADP401 3.1 73.8 1.0 O2B J:ADP401 3.4 94.5 1.0 OD2 J:ASP11 3.6 90.7 1.0 P J:PO4403 4.0 101.9 1.0 NZ J:LYS18 4.0 68.8 1.0 O3A J:ADP401 4.2 77.6 1.0 OD1 J:ASP11 4.2 87.6 1.0 NE2 J:GLN137 4.2 82.7 1.0 O3 J:PO4403 4.3 94.6 1.0 CG J:ASP11 4.3 84.7 1.0 CD J:GLN137 4.4 87.2 1.0 CA J:GLY13 4.4 71.4 1.0 OE1 J:GLN137 4.4 96.9 1.0 O1 J:PO4403 4.4 101.6 1.0 OD2 J:ASP154 4.6 92.5 1.0 O1A J:ADP401 4.7 83.2 1.0 CA J:GLY156 4.9 83.3 1.0 PA J:ADP401 5.0 87.2 1.0

Magnesium binding site 5 out of 7 in the Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg402 b:60.4 occ:1.00 O1B K:ADP401 2.1 81.5 1.0 O2 K:PO4403 2.3 96.1 1.0 PB K:ADP401 3.1 83.8 1.0 O2B K:ADP401 3.7 87.4 1.0 O3B K:ADP401 3.7 85.2 1.0 OD2 K:ASP11 3.7 85.2 1.0 P K:PO4403 3.7 108.3 1.0 OD1 K:ASP11 4.0 82.7 1.0 OE1 K:GLN137 4.0 96.5 1.0 CG K:ASP11 4.2 83.9 1.0 CD K:GLN137 4.2 92.0 1.0 CA K:GLY13 4.3 69.0 1.0 NZ K:LYS18 4.4 73.7 1.0 O1 K:PO4403 4.4 102.2 1.0 O3A K:ADP401 4.5 72.6 1.0 O4 K:PO4403 4.5 91.5 1.0 NE2 K:GLN137 4.5 81.9 1.0 O3 K:PO4403 4.6 98.2 1.0 OD2 K:ASP154 4.7 87.5 1.0 O1A K:ADP401 4.7 87.0 1.0 CG2 K:VAL339 4.8 70.3 1.0 CG K:GLN137 4.9 82.2 1.0

Magnesium binding site 6 out of 7 in the Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg402 b:82.6 occ:1.00 O1B L:ADP401 1.9 82.7 1.0 O2 L:PO4403 2.6 115.5 1.0 PB L:ADP401 3.3 92.8 1.0 OD2 L:ASP154 3.5 89.8 1.0 NE2 L:GLN137 3.9 91.6 1.0 OE1 L:GLN137 4.0 105.3 1.0 OD1 L:ASP154 4.0 84.7 1.0 P L:PO4403 4.0 127.9 1.0 O2B L:ADP401 4.0 86.3 1.0 CD L:GLN137 4.1 99.2 1.0 O3B L:ADP401 4.1 97.9 1.0 CG L:ASP154 4.2 90.7 1.0 O1A L:ADP401 4.2 93.3 1.0 O3A L:ADP401 4.3 86.5 1.0 O4 L:PO4403 4.5 112.9 1.0 CG2 L:VAL339 4.5 98.7 1.0 O1 L:PO4403 4.7 121.9 1.0 PA L:ADP401 4.8 89.1 1.0 NZ L:LYS18 4.8 90.8 1.0 CA L:GLY156 4.9 71.3 1.0 OD2 L:ASP11 4.9 96.8 1.0 O3 L:PO4403 5.0 115.2 1.0

Magnesium binding site 7 out of 7 in the Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg402 b:78.6 occ:1.00 O1B M:ADP401 2.5 84.0 1.0 O2 M:PO4403 2.7 96.5 1.0 OD2 M:ASP11 3.4 90.0 1.0 PB M:ADP401 3.7 87.1 1.0 OD1 M:ASP11 3.7 93.6 1.0 CD M:GLN137 4.0 88.6 1.0 OE1 M:GLN137 4.0 96.7 1.0 CG M:ASP11 4.0 89.3 1.0 NE2 M:GLN137 4.0 77.3 1.0 P M:PO4403 4.0 110.2 1.0 O3B M:ADP401 4.1 89.2 1.0 NZ M:LYS18 4.4 71.2 1.0 O3 M:PO4403 4.4 105.6 1.0 CA M:GLY13 4.4 60.7 1.0 OD2 M:ASP154 4.4 84.1 1.0 O2B M:ADP401 4.4 78.4 1.0 CG2 M:VAL339 4.5 74.9 1.0 O1 M:PO4403 4.5 110.0 1.0 CG M:GLN137 4.6 79.0 1.0 O1A M:ADP401 4.7 87.1 1.0 CB M:VAL339 4.8 74.6 1.0 CG1 M:VAL339 4.9 72.5 1.0 O3A M:ADP401 5.0 74.7 1.0

E.Niedzialkowska, L.Runyan, E.Kudryashova, D.S.Kudryashov, E.H.Egelman. Atomic Structure of Salmonella Sipa/F-Actin Complex By Cryo-Em To Be Published.