Magnesium in PDB 8ui7: Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Gapped Pcna Complex in Intermediate State 3

The binding sites of Magnesium atom in the Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Gapped Pcna Complex in Intermediate State 3 (pdb code 8ui7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Gapped Pcna Complex in Intermediate State 3, PDB code: 8ui7:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Gapped Pcna Complex in Intermediate State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Gapped Pcna Complex in Intermediate State 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2001 b:179.0 occ:1.00 O3G A:AGS2002 2.0 194.2 1.0 O1B A:AGS2002 2.1 194.2 1.0 OG1 A:THR1139 2.2 174.1 1.0 OE2 A:GLU1305 2.6 180.4 1.0 CB A:THR1139 3.0 174.1 1.0 O1A A:AGS2002 3.2 194.2 1.0 PB A:AGS2002 3.3 194.2 1.0 NH2 B:ARG184 3.4 179.2 1.0 PG A:AGS2002 3.4 194.2 1.0 CD A:GLU1305 3.5 180.4 1.0 O3A A:AGS2002 3.7 194.2 1.0 CG2 A:THR1139 3.8 174.1 1.0 PA A:AGS2002 3.8 194.2 1.0 O3B A:AGS2002 3.8 194.2 1.0 OE1 A:GLU1305 4.0 180.4 1.0 OE2 B:GLU159 4.0 164.5 1.0 O2A A:AGS2002 4.0 194.2 1.0 O2G A:AGS2002 4.2 194.2 1.0 CA A:THR1139 4.3 174.1 1.0 N A:THR1139 4.3 174.1 1.0 CG A:GLU1305 4.5 180.4 1.0 O2B A:AGS2002 4.5 194.2 1.0 OE2 A:GLU1306 4.6 189.0 1.0 CZ B:ARG184 4.7 179.2 1.0 NH1 A:ARG1394 4.7 188.8 1.0 OE1 B:GLU159 4.8 164.5 1.0 CD B:GLU159 4.8 164.5 1.0 S1G A:AGS2002 4.9 194.2 1.0 NH1 B:ARG156 5.0 157.8 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Gapped Pcna Complex in Intermediate State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Gapped Pcna Complex in Intermediate State 3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:125.0 occ:1.00 O3G B:AGS402 2.0 140.3 1.0 O1B B:AGS402 2.0 140.3 1.0 OG1 B:THR83 2.1 111.3 1.0 PG B:AGS402 2.5 140.3 1.0 S1G B:AGS402 2.6 140.3 1.0 PB B:AGS402 2.9 140.3 1.0 O3B B:AGS402 3.0 140.3 1.0 CB B:THR83 3.1 111.3 1.0 O1A B:AGS402 3.2 140.3 1.0 O3A B:AGS402 3.6 140.3 1.0 N B:THR83 3.7 111.3 1.0 PA B:AGS402 3.7 140.3 1.0 O2A B:AGS402 3.9 140.3 1.0 NH2 C:ARG139 4.0 135.2 1.0 CA B:THR83 4.0 111.3 1.0 O2G B:AGS402 4.0 140.3 1.0 NH2 B:ARG230 4.2 125.2 1.0 CG2 B:THR83 4.2 111.3 1.0 O2B B:AGS402 4.3 140.3 1.0 CB B:LYS82 4.7 122.7 1.0 CE B:LYS82 4.7 122.7 1.0 NZ B:LYS82 4.7 122.7 1.0 C B:LYS82 4.8 122.7 1.0 NH1 C:ARG139 4.9 135.2 1.0 CZ C:ARG139 4.9 135.2 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Gapped Pcna Complex in Intermediate State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Gapped Pcna Complex in Intermediate State 3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:271.7 occ:1.00 O1B C:AGS402 2.0 266.3 1.0 O2G C:AGS402 2.1 266.3 1.0 OG1 C:THR67 2.1 212.5 1.0 PG C:AGS402 2.9 266.3 1.0 PB C:AGS402 3.0 266.3 1.0 O3B C:AGS402 3.1 266.3 1.0 CB C:THR67 3.4 212.5 1.0 O1A C:AGS402 3.5 266.3 1.0 S1G C:AGS402 3.5 266.3 1.0 O2A C:AGS402 3.7 266.3 1.0 N C:THR67 3.8 212.5 1.0 PA C:AGS402 3.8 266.3 1.0 O3A C:AGS402 3.9 266.3 1.0 CA C:THR67 4.2 212.5 1.0 CE C:LYS66 4.2 198.4 1.0 OD1 C:ASP125 4.3 195.6 1.0 O2B C:AGS402 4.3 266.3 1.0 O3G C:AGS402 4.3 266.3 1.0 OD2 C:ASP125 4.4 195.6 1.0 CG2 C:ILE154 4.4 169.3 1.0 CG2 C:THR67 4.4 212.5 1.0 CB C:LYS66 4.5 198.4 1.0 CG C:ASP125 4.7 195.6 1.0 C C:LYS66 4.7 198.4 1.0 N C:LYS66 4.8 198.4 1.0 NZ C:LYS66 4.9 198.4 1.0 CA C:LYS66 4.9 198.4 1.0

F.Wang, Q.He, H.Li, M.E.O'donnel. Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Closed Pcna Complex To Be Published.