Magnesium in PDB 8ui8: Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Two Pcnas Complex in Intermediate State 3

The binding sites of Magnesium atom in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Two Pcnas Complex in Intermediate State 3 (pdb code 8ui8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Two Pcnas Complex in Intermediate State 3, PDB code: 8ui8:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Two Pcnas Complex in Intermediate State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Two Pcnas Complex in Intermediate State 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2001 b:54.9 occ:1.00 OE2 A:GLU1305 2.0 59.4 1.0 OG1 A:THR1139 2.0 47.7 1.0 O1B A:AGS2002 2.1 58.5 1.0 O3G A:AGS2002 2.2 50.0 1.0 CD A:GLU1305 2.9 59.2 1.0 OE1 A:GLU1305 3.1 60.1 1.0 PB A:AGS2002 3.4 59.1 1.0 CB A:THR1139 3.4 45.1 1.0 CG2 A:THR1335 3.4 60.5 1.0 PG A:AGS2002 3.4 49.2 1.0 O3B A:AGS2002 3.8 48.6 1.0 N A:THR1139 4.1 47.2 1.0 S1G A:AGS2002 4.2 68.0 1.0 O1A A:AGS2002 4.3 50.7 1.0 CG2 A:THR1139 4.3 47.0 1.0 CG A:GLU1305 4.3 57.2 1.0 CA A:THR1139 4.3 39.9 1.0 O2B A:AGS2002 4.3 54.3 1.0 O3A A:AGS2002 4.5 49.5 1.0 CE A:LYS1138 4.6 46.3 1.0 O2A A:AGS2002 4.6 51.7 1.0 CB A:THR1335 4.6 61.2 1.0 PA A:AGS2002 4.7 49.3 1.0 O2G A:AGS2002 4.7 49.2 1.0 CB A:LYS1138 4.9 44.8 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Two Pcnas Complex in Intermediate State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Two Pcnas Complex in Intermediate State 3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:29.6 occ:1.00 OG1 B:THR83 2.0 25.9 1.0 O3G B:AGS402 2.2 38.1 1.0 O1B B:AGS402 2.3 23.5 1.0 CB B:THR83 3.0 19.0 1.0 NH2 C:ARG139 3.2 35.4 1.0 CG2 B:THR83 3.6 20.6 1.0 PG B:AGS402 3.6 24.9 1.0 PB B:AGS402 3.7 25.4 1.0 O1A B:AGS402 3.7 26.7 1.0 O3B B:AGS402 4.2 26.2 1.0 CZ C:ARG139 4.2 33.5 1.0 CA B:THR83 4.3 13.2 1.0 OE2 B:GLU142 4.3 42.2 1.0 NH1 C:ARG139 4.3 28.4 1.0 NH1 C:ARG140 4.3 40.4 1.0 O3A B:AGS402 4.4 22.2 1.0 N B:THR83 4.4 30.2 1.0 PA B:AGS402 4.5 5.3 1.0 S1G B:AGS402 4.5 48.6 1.0 OD1 B:ASP141 4.7 38.8 1.0 O2G B:AGS402 4.7 22.0 1.0 O2B B:AGS402 4.8 32.1 1.0 CZ C:ARG140 4.8 41.2 1.0 O2A B:AGS402 4.8 21.4 1.0 OD2 B:ASP141 4.8 44.8 1.0 NH1 B:ARG230 4.8 30.0 1.0 CG B:ASP141 4.8 37.4 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Two Pcnas Complex in Intermediate State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Two Pcnas Complex in Intermediate State 3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:128.2 occ:1.00 O1B C:AGS402 2.1 136.6 1.0 O2G C:AGS402 2.1 139.4 1.0 OG1 C:THR67 2.1 106.4 1.0 PG C:AGS402 2.6 144.9 1.0 S1G C:AGS402 2.8 140.7 1.0 O3B C:AGS402 3.0 137.3 1.0 PB C:AGS402 3.0 138.5 1.0 CB C:THR67 3.5 106.4 1.0 N C:THR67 3.9 104.5 1.0 O1A C:AGS402 4.0 136.3 1.0 CE C:LYS66 4.1 97.2 1.0 O3A C:AGS402 4.1 137.6 1.0 O3G C:AGS402 4.1 137.7 1.0 O2B C:AGS402 4.2 133.9 1.0 OD1 C:ASP125 4.2 75.8 1.0 CA C:THR67 4.3 106.5 1.0 PA C:AGS402 4.4 138.2 1.0 CG2 C:THR67 4.4 103.4 1.0 OD2 C:ASP125 4.5 70.5 1.0 CG2 C:ILE154 4.5 51.1 1.0 O2A C:AGS402 4.5 133.9 1.0 CB C:LYS66 4.6 96.7 1.0 NZ C:LYS66 4.7 93.5 1.0 CG C:ASP125 4.8 71.9 1.0 C C:LYS66 4.9 96.3 1.0

F.Wang, Q.He, H.Li, M.E.O'donnel. Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Two Pcnas Complex in Intermediate State 3 To Be Published.