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Magnesium in PDB 8va2: Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End.

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End. (pdb code 8va2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End., PDB code: 8va2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8va2

Go back to Magnesium Binding Sites List in 8va2
Magnesium binding site 1 out of 2 in the Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End. within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg502

b:122.7
occ:1.00
O2G a:GTP501 1.9 118.7 1.0
O2B a:GTP501 1.9 118.7 1.0
O3B a:GTP501 2.1 118.7 1.0
PG a:GTP501 2.2 118.7 1.0
PB a:GTP501 2.2 118.7 1.0
O3G a:GTP501 2.6 118.7 1.0
N a:GLY146 2.7 122.2 1.0
CB a:THR145 3.0 127.6 1.0
O1B a:GTP501 3.4 118.7 1.0
N a:THR145 3.4 127.6 1.0
CA a:THR145 3.4 127.6 1.0
C a:THR145 3.5 127.6 1.0
O3A a:GTP501 3.5 118.7 1.0
O2A a:GTP501 3.6 118.7 1.0
CA a:GLY143 3.6 128.0 1.0
C a:GLY143 3.6 128.0 1.0
CA a:GLY146 3.7 122.2 1.0
O1G a:GTP501 3.7 118.7 1.0
OG1 a:THR145 3.7 127.6 1.0
O a:GLY143 3.9 128.0 1.0
CG2 a:THR145 4.0 127.6 1.0
PA a:GTP501 4.1 118.7 1.0
N a:GLY144 4.2 130.8 1.0
C a:GLY144 4.3 130.8 1.0
O5' a:GTP501 4.6 118.7 1.0
O a:THR145 4.7 127.6 1.0
CA a:GLY144 4.9 130.8 1.0
N a:GLY143 4.9 128.0 1.0
CA a:GLY10 4.9 118.2 1.0
C a:GLY146 5.0 122.2 1.0

Magnesium binding site 2 out of 2 in 8va2

Go back to Magnesium Binding Sites List in 8va2
Magnesium binding site 2 out of 2 in the Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End. within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg502

b:135.8
occ:1.00
O2G b:GTP501 1.9 122.5 1.0
PB b:GTP501 2.1 122.5 1.0
O3B b:GTP501 2.2 122.5 1.0
PG b:GTP501 2.4 122.5 1.0
O1B b:GTP501 2.4 122.5 1.0
O2B b:GTP501 2.5 122.5 1.0
CG2 b:THR145 2.8 135.0 1.0
O3G b:GTP501 2.9 122.5 1.0
CB b:THR145 3.7 135.0 1.0
O3A b:GTP501 3.8 122.5 1.0
O1G b:GTP501 3.8 122.5 1.0
OE1 b:GLN11 4.3 125.1 1.0
OG1 b:THR145 4.6 135.0 1.0
N b:THR145 4.7 135.0 1.0
CA b:THR145 4.8 135.0 1.0
PA b:GTP501 4.8 122.5 1.0
NE2 b:GLN11 4.9 125.1 1.0

Reference:

A.Aher, L.Urnavicius, T.M.Kapoor. Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins. To Be Published.
Page generated: Fri Aug 15 17:31:35 2025

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