Atomistry » Magnesium » PDB 8v9g-8vn6 » 8va2
Atomistry »
  Magnesium »
    PDB 8v9g-8vn6 »
      8va2 »

Magnesium in PDB 8va2: Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End.

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End. (pdb code 8va2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End., PDB code: 8va2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8va2

Go back to Magnesium Binding Sites List in 8va2
Magnesium binding site 1 out of 2 in the Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End. within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg502

b:122.7
occ:1.00
O2G a:GTP501 1.9 118.7 1.0
O2B a:GTP501 1.9 118.7 1.0
O3B a:GTP501 2.1 118.7 1.0
PG a:GTP501 2.2 118.7 1.0
PB a:GTP501 2.2 118.7 1.0
O3G a:GTP501 2.6 118.7 1.0
N a:GLY146 2.7 122.2 1.0
CB a:THR145 3.0 127.6 1.0
O1B a:GTP501 3.4 118.7 1.0
N a:THR145 3.4 127.6 1.0
CA a:THR145 3.4 127.6 1.0
C a:THR145 3.5 127.6 1.0
O3A a:GTP501 3.5 118.7 1.0
O2A a:GTP501 3.6 118.7 1.0
CA a:GLY143 3.6 128.0 1.0
C a:GLY143 3.6 128.0 1.0
CA a:GLY146 3.7 122.2 1.0
O1G a:GTP501 3.7 118.7 1.0
OG1 a:THR145 3.7 127.6 1.0
O a:GLY143 3.9 128.0 1.0
CG2 a:THR145 4.0 127.6 1.0
PA a:GTP501 4.1 118.7 1.0
N a:GLY144 4.2 130.8 1.0
C a:GLY144 4.3 130.8 1.0
O5' a:GTP501 4.6 118.7 1.0
O a:THR145 4.7 127.6 1.0
CA a:GLY144 4.9 130.8 1.0
N a:GLY143 4.9 128.0 1.0
CA a:GLY10 4.9 118.2 1.0
C a:GLY146 5.0 122.2 1.0

Magnesium binding site 2 out of 2 in 8va2

Go back to Magnesium Binding Sites List in 8va2
Magnesium binding site 2 out of 2 in the Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins in Gamma Tubulin Ring Complex Capped Microtubule End. within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg502

b:135.8
occ:1.00
O2G b:GTP501 1.9 122.5 1.0
PB b:GTP501 2.1 122.5 1.0
O3B b:GTP501 2.2 122.5 1.0
PG b:GTP501 2.4 122.5 1.0
O1B b:GTP501 2.4 122.5 1.0
O2B b:GTP501 2.5 122.5 1.0
CG2 b:THR145 2.8 135.0 1.0
O3G b:GTP501 2.9 122.5 1.0
CB b:THR145 3.7 135.0 1.0
O3A b:GTP501 3.8 122.5 1.0
O1G b:GTP501 3.8 122.5 1.0
OE1 b:GLN11 4.3 125.1 1.0
OG1 b:THR145 4.6 135.0 1.0
N b:THR145 4.7 135.0 1.0
CA b:THR145 4.8 135.0 1.0
PA b:GTP501 4.8 122.5 1.0
NE2 b:GLN11 4.9 125.1 1.0

Reference:

A.Aher, L.Urnavicius, T.M.Kapoor. Symmetry Expanded Map of 2 Gamma-Tubulins Bound to 2 Alpha Tubulins. To Be Published.
Page generated: Fri Oct 4 22:02:49 2024

Last articles

Zn in 2YRC
Zn in 2YQP
Zn in 2YR2
Zn in 2YQL
Zn in 2YPT
Zn in 2YPA
Zn in 2YPU
Zn in 2YNW
Zn in 2YNT
Zn in 2YNV
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy