Magnesium in PDB 8vaa: Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
(pdb code 8vaa). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 10 binding sites of Magnesium where determined in the
Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin, PDB code: 8vaa:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 10 in 8vaa
Go back to
Magnesium Binding Sites List in 8vaa
Magnesium binding site 1 out
of 10 in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:29.9
occ:1.00
|
O3B
|
A:ADP401
|
2.1
|
30.4
|
1.0
|
|
O1B
|
A:ADP401
|
2.1
|
30.4
|
1.0
|
|
PB
|
A:ADP401
|
2.4
|
30.4
|
1.0
|
|
O3A
|
A:ADP401
|
3.0
|
30.4
|
1.0
|
|
HA3
|
A:GLY158
|
3.6
|
24.3
|
1.0
|
|
HZ1
|
A:LYS20
|
3.6
|
30.4
|
1.0
|
|
HA2
|
A:GLY303
|
3.8
|
23.0
|
1.0
|
|
O2B
|
A:ADP401
|
3.9
|
30.4
|
1.0
|
|
HA2
|
A:GLY158
|
3.9
|
24.3
|
1.0
|
|
HG21
|
A:VAL341
|
4.1
|
25.4
|
1.0
|
|
CA
|
A:GLY158
|
4.2
|
24.3
|
1.0
|
|
PA
|
A:ADP401
|
4.2
|
30.4
|
1.0
|
|
O1A
|
A:ADP401
|
4.3
|
30.4
|
1.0
|
|
OE1
|
A:GLN139
|
4.3
|
24.5
|
1.0
|
|
NZ
|
A:LYS20
|
4.3
|
30.4
|
1.0
|
|
HE22
|
A:GLN139
|
4.3
|
24.5
|
1.0
|
|
HZ3
|
A:LYS20
|
4.3
|
30.4
|
1.0
|
|
HZ2
|
A:LYS20
|
4.4
|
30.4
|
1.0
|
|
HG23
|
A:VAL341
|
4.5
|
25.4
|
1.0
|
|
H
|
A:GLY304
|
4.5
|
24.9
|
1.0
|
|
OD1
|
A:ASP156
|
4.6
|
22.8
|
1.0
|
|
CA
|
A:GLY303
|
4.6
|
23.0
|
1.0
|
|
HA3
|
A:GLY303
|
4.6
|
23.0
|
1.0
|
|
HB
|
A:VAL341
|
4.6
|
25.4
|
1.0
|
|
H
|
A:ASP159
|
4.7
|
27.7
|
1.0
|
|
CG2
|
A:VAL341
|
4.7
|
25.4
|
1.0
|
|
O2A
|
A:ADP401
|
4.8
|
30.4
|
1.0
|
|
NE2
|
A:GLN139
|
4.8
|
24.5
|
1.0
|
|
CD
|
A:GLN139
|
4.9
|
24.5
|
1.0
|
|
OD2
|
A:ASP156
|
4.9
|
22.8
|
1.0
|
|
N
|
A:GLY158
|
5.0
|
24.3
|
1.0
|
|
Magnesium binding site 2 out
of 10 in 8vaa
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Magnesium Binding Sites List in 8vaa
Magnesium binding site 2 out
of 10 in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:15.8
occ:1.00
|
O3B
|
B:ADP401
|
2.0
|
16.7
|
1.0
|
|
O1B
|
B:ADP401
|
2.1
|
16.7
|
1.0
|
|
PB
|
B:ADP401
|
2.3
|
16.7
|
1.0
|
|
O3A
|
B:ADP401
|
3.0
|
16.7
|
1.0
|
|
HZ1
|
B:LYS20
|
3.5
|
16.8
|
1.0
|
|
HA3
|
B:GLY158
|
3.6
|
13.3
|
1.0
|
|
O2B
|
B:ADP401
|
3.8
|
16.7
|
1.0
|
|
HA2
|
B:GLY303
|
4.0
|
12.5
|
1.0
|
|
HA2
|
B:GLY158
|
4.0
|
13.3
|
1.0
|
|
HE22
|
B:GLN139
|
4.1
|
14.3
|
1.0
|
|
PA
|
B:ADP401
|
4.2
|
16.7
|
1.0
|
|
NZ
|
B:LYS20
|
4.2
|
16.8
|
1.0
|
|
O1A
|
B:ADP401
|
4.2
|
16.7
|
1.0
|
|
OE1
|
B:GLN139
|
4.2
|
14.3
|
1.0
|
|
CA
|
B:GLY158
|
4.3
|
13.3
|
1.0
|
|
HZ3
|
B:LYS20
|
4.3
|
16.8
|
1.0
|
|
HZ2
|
B:LYS20
|
4.3
|
16.8
|
1.0
|
|
HG21
|
B:VAL341
|
4.3
|
14.0
|
1.0
|
|
NE2
|
B:GLN139
|
4.7
|
14.3
|
1.0
|
|
H
|
B:GLY304
|
4.7
|
13.8
|
1.0
|
|
OD2
|
B:ASP13
|
4.7
|
17.4
|
1.0
|
|
H
|
B:ASP159
|
4.7
|
14.8
|
1.0
|
|
HG23
|
B:VAL341
|
4.7
|
14.0
|
1.0
|
|
OD1
|
B:ASP156
|
4.7
|
13.7
|
1.0
|
|
HB
|
B:VAL341
|
4.8
|
14.0
|
1.0
|
|
CD
|
B:GLN139
|
4.8
|
14.3
|
1.0
|
|
O2A
|
B:ADP401
|
4.8
|
16.7
|
1.0
|
|
CA
|
B:GLY303
|
4.9
|
12.5
|
1.0
|
|
HA3
|
B:GLY303
|
4.9
|
12.5
|
1.0
|
|
CG2
|
B:VAL341
|
4.9
|
14.0
|
1.0
|
|
HA3
|
B:GLY15
|
4.9
|
19.1
|
1.0
|
|
OD2
|
B:ASP156
|
4.9
|
13.7
|
1.0
|
|
Magnesium binding site 3 out
of 10 in 8vaa
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Magnesium Binding Sites List in 8vaa
Magnesium binding site 3 out
of 10 in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:9.5
occ:1.00
|
O3B
|
C:ADP401
|
2.0
|
10.1
|
1.0
|
|
O1B
|
C:ADP401
|
2.3
|
10.1
|
1.0
|
|
PB
|
C:ADP401
|
2.4
|
10.1
|
1.0
|
|
O3A
|
C:ADP401
|
2.9
|
10.1
|
1.0
|
|
HA3
|
C:GLY158
|
3.4
|
10.1
|
1.0
|
|
HZ1
|
C:LYS20
|
3.7
|
10.7
|
1.0
|
|
HA2
|
C:GLY158
|
3.7
|
10.1
|
1.0
|
|
HA2
|
C:GLY303
|
3.7
|
8.5
|
1.0
|
|
O2B
|
C:ADP401
|
3.9
|
10.1
|
1.0
|
|
CA
|
C:GLY158
|
4.0
|
10.1
|
1.0
|
|
O1A
|
C:ADP401
|
4.1
|
10.1
|
1.0
|
|
PA
|
C:ADP401
|
4.1
|
10.1
|
1.0
|
|
HG21
|
C:VAL341
|
4.3
|
8.9
|
1.0
|
|
OE1
|
C:GLN139
|
4.3
|
10.4
|
1.0
|
|
H
|
C:GLY304
|
4.4
|
10.0
|
1.0
|
|
HE22
|
C:GLN139
|
4.4
|
10.4
|
1.0
|
|
NZ
|
C:LYS20
|
4.4
|
10.7
|
1.0
|
|
HZ3
|
C:LYS20
|
4.5
|
10.7
|
1.0
|
|
H
|
C:ASP159
|
4.5
|
9.7
|
1.0
|
|
OD1
|
C:ASP156
|
4.5
|
8.7
|
1.0
|
|
HZ2
|
C:LYS20
|
4.5
|
10.7
|
1.0
|
|
CA
|
C:GLY303
|
4.6
|
8.5
|
1.0
|
|
HA3
|
C:GLY303
|
4.6
|
8.5
|
1.0
|
|
HG23
|
C:VAL341
|
4.7
|
8.9
|
1.0
|
|
N
|
C:GLY158
|
4.8
|
10.1
|
1.0
|
|
O2A
|
C:ADP401
|
4.8
|
10.1
|
1.0
|
|
OD2
|
C:ASP13
|
4.9
|
10.8
|
1.0
|
|
OD2
|
C:ASP156
|
4.9
|
8.7
|
1.0
|
|
HB
|
C:VAL341
|
4.9
|
8.9
|
1.0
|
|
CG2
|
C:VAL341
|
4.9
|
8.9
|
1.0
|
|
NE2
|
C:GLN139
|
4.9
|
10.4
|
1.0
|
|
H
|
C:GLY158
|
4.9
|
10.1
|
1.0
|
|
CD
|
C:GLN139
|
4.9
|
10.4
|
1.0
|
|
Magnesium binding site 4 out
of 10 in 8vaa
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Magnesium Binding Sites List in 8vaa
Magnesium binding site 4 out
of 10 in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:19.2
occ:1.00
|
O3B
|
D:ADP401
|
2.1
|
11.3
|
1.0
|
|
O1B
|
D:ADP401
|
2.3
|
11.3
|
1.0
|
|
PB
|
D:ADP401
|
2.5
|
11.3
|
1.0
|
|
O3A
|
D:ADP401
|
3.2
|
11.3
|
1.0
|
|
HA3
|
D:GLY158
|
3.6
|
13.8
|
1.0
|
|
HZ1
|
D:LYS20
|
3.6
|
12.1
|
1.0
|
|
HA2
|
D:GLY303
|
3.8
|
11.5
|
1.0
|
|
HA2
|
D:GLY158
|
3.9
|
13.8
|
1.0
|
|
HG21
|
D:VAL341
|
4.0
|
11.5
|
1.0
|
|
O2B
|
D:ADP401
|
4.0
|
11.3
|
1.0
|
|
OE1
|
D:GLN139
|
4.1
|
11.4
|
1.0
|
|
HE22
|
D:GLN139
|
4.2
|
11.4
|
1.0
|
|
CA
|
D:GLY158
|
4.2
|
13.8
|
1.0
|
|
NZ
|
D:LYS20
|
4.3
|
12.1
|
1.0
|
|
PA
|
D:ADP401
|
4.3
|
11.3
|
1.0
|
|
O1A
|
D:ADP401
|
4.3
|
11.3
|
1.0
|
|
HZ3
|
D:LYS20
|
4.4
|
12.1
|
1.0
|
|
HG23
|
D:VAL341
|
4.4
|
11.5
|
1.0
|
|
HZ2
|
D:LYS20
|
4.5
|
12.1
|
1.0
|
|
OD1
|
D:ASP156
|
4.5
|
11.5
|
1.0
|
|
HB
|
D:VAL341
|
4.5
|
11.5
|
1.0
|
|
CG2
|
D:VAL341
|
4.6
|
11.5
|
1.0
|
|
OD2
|
D:ASP13
|
4.6
|
12.1
|
1.0
|
|
H
|
D:GLY304
|
4.6
|
10.8
|
1.0
|
|
CA
|
D:GLY303
|
4.6
|
11.5
|
1.0
|
|
HA3
|
D:GLY303
|
4.7
|
11.5
|
1.0
|
|
NE2
|
D:GLN139
|
4.7
|
11.4
|
1.0
|
|
CD
|
D:GLN139
|
4.7
|
11.4
|
1.0
|
|
OD2
|
D:ASP156
|
4.8
|
11.5
|
1.0
|
|
H
|
D:ASP159
|
4.8
|
19.2
|
1.0
|
|
HG11
|
D:VAL341
|
4.9
|
11.5
|
1.0
|
|
N
|
D:GLY158
|
5.0
|
13.8
|
1.0
|
|
O2A
|
D:ADP401
|
5.0
|
11.3
|
1.0
|
|
Magnesium binding site 5 out
of 10 in 8vaa
Go back to
Magnesium Binding Sites List in 8vaa
Magnesium binding site 5 out
of 10 in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg402
b:12.4
occ:1.00
|
O3B
|
E:ADP401
|
2.2
|
19.2
|
1.0
|
|
O1B
|
E:ADP401
|
2.4
|
19.2
|
1.0
|
|
PB
|
E:ADP401
|
2.7
|
19.2
|
1.0
|
|
O3A
|
E:ADP401
|
3.2
|
19.2
|
1.0
|
|
HA3
|
E:GLY158
|
3.4
|
11.2
|
1.0
|
|
HA2
|
E:GLY303
|
3.8
|
13.7
|
1.0
|
|
HA2
|
E:GLY158
|
3.8
|
11.2
|
1.0
|
|
OE1
|
E:GLN139
|
3.9
|
10.4
|
1.0
|
|
HG21
|
E:VAL341
|
3.9
|
11.5
|
1.0
|
|
HZ1
|
E:LYS20
|
3.9
|
12.1
|
1.0
|
|
HE22
|
E:GLN139
|
4.0
|
10.4
|
1.0
|
|
CA
|
E:GLY158
|
4.0
|
11.2
|
1.0
|
|
O2B
|
E:ADP401
|
4.1
|
19.2
|
1.0
|
|
OD1
|
E:ASP156
|
4.3
|
9.7
|
1.0
|
|
HG23
|
E:VAL341
|
4.4
|
11.5
|
1.0
|
|
PA
|
E:ADP401
|
4.5
|
19.2
|
1.0
|
|
O1A
|
E:ADP401
|
4.5
|
19.2
|
1.0
|
|
CD
|
E:GLN139
|
4.5
|
10.4
|
1.0
|
|
NE2
|
E:GLN139
|
4.5
|
10.4
|
1.0
|
|
CG2
|
E:VAL341
|
4.6
|
11.5
|
1.0
|
|
NZ
|
E:LYS20
|
4.6
|
12.1
|
1.0
|
|
OD2
|
E:ASP156
|
4.6
|
9.7
|
1.0
|
|
HZ3
|
E:LYS20
|
4.6
|
12.1
|
1.0
|
|
HB
|
E:VAL341
|
4.7
|
11.5
|
1.0
|
|
OD2
|
E:ASP13
|
4.7
|
11.4
|
1.0
|
|
HA3
|
E:GLY303
|
4.7
|
13.7
|
1.0
|
|
CA
|
E:GLY303
|
4.7
|
13.7
|
1.0
|
|
H
|
E:GLY304
|
4.7
|
14.7
|
1.0
|
|
HZ2
|
E:LYS20
|
4.7
|
12.1
|
1.0
|
|
H
|
E:ASP159
|
4.7
|
11.7
|
1.0
|
|
N
|
E:GLY158
|
4.7
|
11.2
|
1.0
|
|
H
|
E:GLY158
|
4.8
|
11.2
|
1.0
|
|
HG11
|
E:VAL341
|
4.9
|
11.5
|
1.0
|
|
CG
|
E:ASP156
|
4.9
|
9.7
|
1.0
|
|
Magnesium binding site 6 out
of 10 in 8vaa
Go back to
Magnesium Binding Sites List in 8vaa
Magnesium binding site 6 out
of 10 in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg402
b:11.3
occ:1.00
|
O3B
|
F:ADP401
|
2.3
|
19.2
|
1.0
|
|
O1B
|
F:ADP401
|
2.6
|
19.2
|
1.0
|
|
PB
|
F:ADP401
|
2.8
|
19.2
|
1.0
|
|
O3A
|
F:ADP401
|
3.2
|
19.2
|
1.0
|
|
HA3
|
F:GLY158
|
3.5
|
11.3
|
1.0
|
|
HZ1
|
F:LYS20
|
3.8
|
12.4
|
1.0
|
|
HA2
|
F:GLY303
|
3.8
|
12.5
|
1.0
|
|
HG21
|
F:VAL341
|
3.8
|
12.3
|
1.0
|
|
HA2
|
F:GLY158
|
3.9
|
11.3
|
1.0
|
|
OE1
|
F:GLN139
|
4.0
|
10.9
|
1.0
|
|
HE22
|
F:GLN139
|
4.1
|
10.9
|
1.0
|
|
CA
|
F:GLY158
|
4.2
|
11.3
|
1.0
|
|
O2B
|
F:ADP401
|
4.3
|
19.2
|
1.0
|
|
HG23
|
F:VAL341
|
4.3
|
12.3
|
1.0
|
|
OD1
|
F:ASP156
|
4.4
|
10.5
|
1.0
|
|
PA
|
F:ADP401
|
4.4
|
19.2
|
1.0
|
|
NZ
|
F:LYS20
|
4.5
|
12.4
|
1.0
|
|
HZ3
|
F:LYS20
|
4.5
|
12.4
|
1.0
|
|
CG2
|
F:VAL341
|
4.5
|
12.3
|
1.0
|
|
O1A
|
F:ADP401
|
4.5
|
19.2
|
1.0
|
|
HB
|
F:VAL341
|
4.5
|
12.3
|
1.0
|
|
HZ2
|
F:LYS20
|
4.6
|
12.4
|
1.0
|
|
NE2
|
F:GLN139
|
4.6
|
10.9
|
1.0
|
|
CD
|
F:GLN139
|
4.6
|
10.9
|
1.0
|
|
OD2
|
F:ASP156
|
4.7
|
10.5
|
1.0
|
|
CA
|
F:GLY303
|
4.7
|
12.5
|
1.0
|
|
H
|
F:GLY304
|
4.7
|
13.2
|
1.0
|
|
HA3
|
F:GLY303
|
4.7
|
12.5
|
1.0
|
|
N
|
F:GLY158
|
4.8
|
11.3
|
1.0
|
|
HG11
|
F:VAL341
|
4.9
|
12.3
|
1.0
|
|
H
|
F:ASP159
|
4.9
|
11.6
|
1.0
|
|
H
|
F:GLY158
|
4.9
|
11.3
|
1.0
|
|
CG
|
F:ASP156
|
5.0
|
10.5
|
1.0
|
|
Magnesium binding site 7 out
of 10 in 8vaa
Go back to
Magnesium Binding Sites List in 8vaa
Magnesium binding site 7 out
of 10 in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg402
b:19.2
occ:1.00
|
O3B
|
G:ADP401
|
2.1
|
12.4
|
1.0
|
|
O1B
|
G:ADP401
|
2.5
|
12.4
|
1.0
|
|
PB
|
G:ADP401
|
2.6
|
12.4
|
1.0
|
|
O3A
|
G:ADP401
|
3.0
|
12.4
|
1.0
|
|
HA3
|
G:GLY158
|
3.2
|
9.7
|
1.0
|
|
HA2
|
G:GLY158
|
3.6
|
9.7
|
1.0
|
|
HA2
|
G:GLY303
|
3.6
|
11.6
|
1.0
|
|
CA
|
G:GLY158
|
3.8
|
9.7
|
1.0
|
|
HZ1
|
G:LYS20
|
4.0
|
12.1
|
1.0
|
|
O2B
|
G:ADP401
|
4.1
|
12.4
|
1.0
|
|
OE1
|
G:GLN139
|
4.1
|
12.4
|
1.0
|
|
HG21
|
G:VAL341
|
4.1
|
11.9
|
1.0
|
|
OD1
|
G:ASP156
|
4.2
|
11.2
|
1.0
|
|
PA
|
G:ADP401
|
4.3
|
12.4
|
1.0
|
|
HE22
|
G:GLN139
|
4.3
|
12.4
|
1.0
|
|
O1A
|
G:ADP401
|
4.4
|
12.4
|
1.0
|
|
H
|
G:GLY304
|
4.4
|
10.0
|
1.0
|
|
CA
|
G:GLY303
|
4.5
|
11.6
|
1.0
|
|
N
|
G:GLY158
|
4.5
|
9.7
|
1.0
|
|
HA3
|
G:GLY303
|
4.5
|
11.6
|
1.0
|
|
HG23
|
G:VAL341
|
4.5
|
11.9
|
1.0
|
|
H
|
G:ASP159
|
4.6
|
8.9
|
1.0
|
|
H
|
G:GLY158
|
4.6
|
9.7
|
1.0
|
|
NZ
|
G:LYS20
|
4.7
|
12.1
|
1.0
|
|
OD2
|
G:ASP156
|
4.8
|
11.2
|
1.0
|
|
HZ3
|
G:LYS20
|
4.8
|
12.1
|
1.0
|
|
CG2
|
G:VAL341
|
4.8
|
11.9
|
1.0
|
|
CD
|
G:GLN139
|
4.8
|
12.4
|
1.0
|
|
HZ2
|
G:LYS20
|
4.8
|
12.1
|
1.0
|
|
NE2
|
G:GLN139
|
4.8
|
12.4
|
1.0
|
|
HB
|
G:VAL341
|
4.9
|
11.9
|
1.0
|
|
CG
|
G:ASP156
|
4.9
|
11.2
|
1.0
|
|
O2A
|
G:ADP401
|
5.0
|
12.4
|
1.0
|
|
Magnesium binding site 8 out
of 10 in 8vaa
Go back to
Magnesium Binding Sites List in 8vaa
Magnesium binding site 8 out
of 10 in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg402
b:16.4
occ:1.00
|
O1B
|
H:ADP401
|
2.1
|
16.5
|
1.0
|
|
O3B
|
H:ADP401
|
2.3
|
16.5
|
1.0
|
|
PB
|
H:ADP401
|
2.5
|
16.5
|
1.0
|
|
O3A
|
H:ADP401
|
3.0
|
16.5
|
1.0
|
|
HA3
|
H:GLY158
|
3.3
|
14.7
|
1.0
|
|
HA2
|
H:GLY303
|
3.4
|
15.2
|
1.0
|
|
HA2
|
H:GLY158
|
3.7
|
14.7
|
1.0
|
|
HZ1
|
H:LYS20
|
3.7
|
17.9
|
1.0
|
|
CA
|
H:GLY158
|
4.0
|
14.7
|
1.0
|
|
O2B
|
H:ADP401
|
4.0
|
16.5
|
1.0
|
|
HG21
|
H:VAL341
|
4.1
|
18.7
|
1.0
|
|
PA
|
H:ADP401
|
4.2
|
16.5
|
1.0
|
|
O1A
|
H:ADP401
|
4.2
|
16.5
|
1.0
|
|
H
|
H:GLY304
|
4.2
|
15.0
|
1.0
|
|
CA
|
H:GLY303
|
4.3
|
15.2
|
1.0
|
|
OE1
|
H:GLN139
|
4.4
|
19.4
|
1.0
|
|
HA3
|
H:GLY303
|
4.4
|
15.2
|
1.0
|
|
OD1
|
H:ASP156
|
4.4
|
18.0
|
1.0
|
|
NZ
|
H:LYS20
|
4.4
|
17.9
|
1.0
|
|
HG23
|
H:VAL341
|
4.5
|
18.7
|
1.0
|
|
HZ3
|
H:LYS20
|
4.5
|
17.9
|
1.0
|
|
HE22
|
H:GLN139
|
4.5
|
19.4
|
1.0
|
|
HZ2
|
H:LYS20
|
4.6
|
17.9
|
1.0
|
|
H
|
H:ASP159
|
4.6
|
14.1
|
1.0
|
|
N
|
H:GLY158
|
4.7
|
14.7
|
1.0
|
|
CG2
|
H:VAL341
|
4.7
|
18.7
|
1.0
|
|
OD2
|
H:ASP156
|
4.7
|
18.0
|
1.0
|
|
HB
|
H:VAL341
|
4.8
|
18.7
|
1.0
|
|
H
|
H:GLY158
|
4.8
|
14.7
|
1.0
|
|
O2A
|
H:ADP401
|
4.9
|
16.5
|
1.0
|
|
OD1
|
H:ASP13
|
4.9
|
20.1
|
1.0
|
|
N
|
H:GLY304
|
4.9
|
15.0
|
1.0
|
|
Magnesium binding site 9 out
of 10 in 8vaa
Go back to
Magnesium Binding Sites List in 8vaa
Magnesium binding site 9 out
of 10 in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg402
b:30.5
occ:1.00
|
O3B
|
I:ADP401
|
2.0
|
30.2
|
1.0
|
|
O1B
|
I:ADP401
|
2.2
|
30.2
|
1.0
|
|
PB
|
I:ADP401
|
2.4
|
30.2
|
1.0
|
|
O3A
|
I:ADP401
|
2.9
|
30.2
|
1.0
|
|
HA3
|
I:GLY158
|
3.2
|
28.3
|
1.0
|
|
HA2
|
I:GLY303
|
3.6
|
29.8
|
1.0
|
|
HA2
|
I:GLY158
|
3.6
|
28.3
|
1.0
|
|
HZ1
|
I:LYS20
|
3.7
|
32.4
|
1.0
|
|
CA
|
I:GLY158
|
3.8
|
28.3
|
1.0
|
|
O2B
|
I:ADP401
|
3.9
|
30.2
|
1.0
|
|
PA
|
I:ADP401
|
4.1
|
30.2
|
1.0
|
|
O1A
|
I:ADP401
|
4.2
|
30.2
|
1.0
|
|
HG21
|
I:VAL341
|
4.3
|
34.2
|
1.0
|
|
H
|
I:GLY304
|
4.3
|
29.2
|
1.0
|
|
OE1
|
I:GLN139
|
4.3
|
35.9
|
1.0
|
|
OD1
|
I:ASP156
|
4.4
|
32.9
|
1.0
|
|
CA
|
I:GLY303
|
4.4
|
29.8
|
1.0
|
|
HA3
|
I:GLY303
|
4.4
|
29.8
|
1.0
|
|
NZ
|
I:LYS20
|
4.5
|
32.4
|
1.0
|
|
H
|
I:ASP159
|
4.5
|
27.0
|
1.0
|
|
HE22
|
I:GLN139
|
4.5
|
35.9
|
1.0
|
|
N
|
I:GLY158
|
4.6
|
28.3
|
1.0
|
|
HZ3
|
I:LYS20
|
4.6
|
32.4
|
1.0
|
|
HZ2
|
I:LYS20
|
4.6
|
32.4
|
1.0
|
|
HG23
|
I:VAL341
|
4.7
|
34.2
|
1.0
|
|
OD2
|
I:ASP13
|
4.7
|
36.8
|
1.0
|
|
H
|
I:GLY158
|
4.7
|
28.3
|
1.0
|
|
OD2
|
I:ASP156
|
4.8
|
32.9
|
1.0
|
|
O2A
|
I:ADP401
|
4.8
|
30.2
|
1.0
|
|
CG2
|
I:VAL341
|
4.9
|
34.2
|
1.0
|
|
HB
|
I:VAL341
|
4.9
|
34.2
|
1.0
|
|
Magnesium binding site 10 out
of 10 in 8vaa
Go back to
Magnesium Binding Sites List in 8vaa
Magnesium binding site 10 out
of 10 in the Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Actin-Binding Domain of Legionella Pneumophila Effector LFAT1 (LPG1387) Bound to F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg402
b:47.0
occ:1.00
|
O3B
|
J:ADP401
|
2.1
|
50.7
|
1.0
|
|
O1B
|
J:ADP401
|
2.2
|
50.7
|
1.0
|
|
PB
|
J:ADP401
|
2.4
|
50.7
|
1.0
|
|
O3A
|
J:ADP401
|
2.8
|
50.7
|
1.0
|
|
HA3
|
J:GLY158
|
3.3
|
52.0
|
1.0
|
|
HA2
|
J:GLY303
|
3.6
|
52.5
|
1.0
|
|
HA2
|
J:GLY158
|
3.6
|
52.0
|
1.0
|
|
HZ1
|
J:LYS20
|
3.6
|
54.5
|
1.0
|
|
O2B
|
J:ADP401
|
3.9
|
50.7
|
1.0
|
|
CA
|
J:GLY158
|
3.9
|
52.0
|
1.0
|
|
PA
|
J:ADP401
|
4.0
|
50.7
|
1.0
|
|
O1A
|
J:ADP401
|
4.1
|
50.7
|
1.0
|
|
H
|
J:GLY304
|
4.3
|
53.8
|
1.0
|
|
NZ
|
J:LYS20
|
4.4
|
54.5
|
1.0
|
|
HG21
|
J:VAL341
|
4.4
|
57.1
|
1.0
|
|
OE1
|
J:GLN139
|
4.4
|
59.2
|
1.0
|
|
HZ3
|
J:LYS20
|
4.5
|
54.5
|
1.0
|
|
CA
|
J:GLY303
|
4.5
|
52.5
|
1.0
|
|
H
|
J:ASP159
|
4.5
|
51.1
|
1.0
|
|
HA3
|
J:GLY303
|
4.5
|
52.5
|
1.0
|
|
HE22
|
J:GLN139
|
4.5
|
59.2
|
1.0
|
|
HZ2
|
J:LYS20
|
4.5
|
54.5
|
1.0
|
|
OD1
|
J:ASP156
|
4.6
|
56.8
|
1.0
|
|
N
|
J:GLY158
|
4.7
|
52.0
|
1.0
|
|
HG23
|
J:VAL341
|
4.7
|
57.1
|
1.0
|
|
O2A
|
J:ADP401
|
4.7
|
50.7
|
1.0
|
|
OD2
|
J:ASP13
|
4.8
|
58.5
|
1.0
|
|
H
|
J:GLY158
|
4.8
|
52.0
|
1.0
|
|
HB
|
J:VAL341
|
4.9
|
57.1
|
1.0
|
|
CG2
|
J:VAL341
|
5.0
|
57.1
|
1.0
|
|
N
|
J:GLY304
|
5.0
|
53.8
|
1.0
|
|
Reference:
W.Zeng,
G.Komaniecki,
H.Lin,
Y.Mao.
Structural Basis For A Novel F-Actin Binding Domain From the Legionella Pneumophila Lysine Fatty-Acyltransferase LFAT1 To Be Published.
Page generated: Sat Feb 8 20:46:30 2025
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