Magnesium in PDB 8vb7: Kinetic Intermediate States of Hiv-1 Rt Dna Synthesis Captured By Cryo-Em

The binding sites of Magnesium atom in the Kinetic Intermediate States of Hiv-1 Rt Dna Synthesis Captured By Cryo-Em (pdb code 8vb7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Kinetic Intermediate States of Hiv-1 Rt Dna Synthesis Captured By Cryo-Em, PDB code: 8vb7:

Magnesium binding site 1 out of 1 in the Kinetic Intermediate States of Hiv-1 Rt Dna Synthesis Captured By Cryo-Em


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Kinetic Intermediate States of Hiv-1 Rt Dna Synthesis Captured By Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:83.0 occ:1.00 O1A A:DTP602 2.1 105.8 1.0 O3G A:DTP602 2.2 103.3 1.0 OD2 A:ASP110 2.2 114.7 1.0 O A:VAL111 2.2 103.2 1.0 OD2 A:ASP185 2.4 104.4 1.0 O2B A:DTP602 2.5 104.0 1.0 CG A:ASP110 3.3 115.6 1.0 C A:VAL111 3.3 99.1 1.0 PA A:DTP602 3.5 108.1 1.0 PG A:DTP602 3.5 108.7 1.0 PB A:DTP602 3.5 106.0 1.0 CG A:ASP185 3.7 104.7 1.0 O3B A:DTP602 3.7 100.0 1.0 O3A A:DTP602 3.8 100.0 1.0 OD1 A:ASP110 4.0 111.6 1.0 N A:VAL111 4.1 98.8 1.0 NZ A:LYS220 4.1 113.2 1.0 N A:GLY112 4.2 102.1 1.0 CA A:GLY112 4.2 102.5 1.0 C5' A:DTP602 4.3 96.9 1.0 CA A:VAL111 4.3 97.2 1.0 O5' A:DTP602 4.3 97.1 1.0 O2G A:DTP602 4.4 103.3 1.0 OD1 A:ASP185 4.4 109.5 1.0 O1G A:DTP602 4.4 103.3 1.0 CB A:ASP110 4.4 109.3 1.0 N A:ASP113 4.5 110.1 1.0 O2A A:DTP602 4.5 106.1 1.0 C A:ASP110 4.5 107.7 1.0 CB A:ASP185 4.6 103.0 1.0 CB A:ALA114 4.7 98.1 1.0 C A:GLY112 4.7 109.2 1.0 N A:ALA114 4.8 91.8 1.0 CD A:LYS220 4.9 112.8 1.0 O1B A:DTP602 4.9 105.6 1.0 O3' F:DG33 4.9 109.4 1.0 CA A:ASP110 4.9 103.0 1.0 CB A:VAL111 4.9 97.3 1.0 CE A:LYS220 5.0 114.0 1.0

S.Vergara, X.Zhou, U.Santiago, M.Alaoui-El-Azher, J.F.Conway, N.Sluis-Cremer, G.Calero. Structural Basis of Deoxynucleotide Addition By Hiv-1 Rt During Reverse Transcription Nat Commun V. 15 10553 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-024-54618-Y