Magnesium in PDB 8vfm: Salmonella Effector Protein Sipa Decorated Actin Filament

The binding sites of Magnesium atom in the Salmonella Effector Protein Sipa Decorated Actin Filament (pdb code 8vfm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Salmonella Effector Protein Sipa Decorated Actin Filament, PDB code: 8vfm:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Salmonella Effector Protein Sipa Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Salmonella Effector Protein Sipa Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg801 b:93.7 occ:1.00 O3A J:ADP802 2.1 89.6 1.0 O1B J:ADP802 2.1 89.6 1.0 PB J:ADP802 2.4 89.6 1.0 O2B J:ADP802 2.6 89.6 1.0 O1A J:ADP802 3.2 89.6 1.0 PA J:ADP802 3.2 89.6 1.0 CA J:GLY156 3.3 89.8 1.0 O3B J:ADP802 3.8 89.6 1.0 O5' J:ADP802 4.2 89.6 1.0 O2A J:ADP802 4.2 89.6 1.0 NZ J:LYS18 4.2 97.6 1.0 N J:ASP157 4.3 95.3 1.0 N J:GLY156 4.3 89.8 1.0 C J:GLY156 4.3 89.8 1.0 CA J:GLY301 4.4 93.4 1.0 N J:GLY302 4.5 92.7 1.0 OD1 J:ASP154 4.8 92.6 1.0 O J:SER155 4.8 88.9 1.0 NE2 J:GLN137 4.8 98.4 1.0 C J:SER155 4.9 88.9 1.0

Magnesium binding site 2 out of 8 in the Salmonella Effector Protein Sipa Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Salmonella Effector Protein Sipa Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg801 b:101.0 occ:1.00 O1B L:ADP802 2.1 101.0 1.0 O3A L:ADP802 2.1 101.0 1.0 PB L:ADP802 2.4 101.0 1.0 O2B L:ADP802 2.7 101.0 1.0 PA L:ADP802 3.3 101.0 1.0 O1A L:ADP802 3.3 101.0 1.0 CA L:GLY156 3.4 102.0 1.0 O3B L:ADP802 3.8 101.0 1.0 NZ L:LYS18 4.2 104.2 1.0 CA L:GLY301 4.2 101.6 1.0 O5' L:ADP802 4.3 101.0 1.0 O2A L:ADP802 4.3 101.0 1.0 N L:GLY156 4.4 102.0 1.0 N L:GLY302 4.4 103.1 1.0 N L:ASP157 4.5 100.7 1.0 C L:GLY156 4.5 102.0 1.0 OD1 L:ASP154 4.6 102.1 1.0 NE2 L:GLN137 4.7 103.5 1.0 O L:SER155 4.8 100.3 1.0 C L:SER155 4.9 100.3 1.0 C L:GLY301 4.9 101.6 1.0

Magnesium binding site 3 out of 8 in the Salmonella Effector Protein Sipa Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Salmonella Effector Protein Sipa Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg801 b:106.8 occ:1.00 O3B M:ADP802 2.0 99.1 1.0 O2A M:ADP802 2.2 99.1 1.0 O1A M:ADP802 2.3 99.1 1.0 PA M:ADP802 2.3 99.1 1.0 PB M:ADP802 2.4 99.1 1.0 O1B M:ADP802 2.4 99.1 1.0 NZ M:LYS18 2.5 102.0 1.0 O3A M:ADP802 2.7 99.1 1.0 CE M:LYS18 3.7 102.0 1.0 O2B M:ADP802 3.9 99.1 1.0 O5' M:ADP802 3.9 99.1 1.0 CD M:LYS18 4.4 102.0 1.0 O M:LEU16 4.5 99.7 1.0 O M:LYS336 4.5 99.3 1.0 N M:GLY302 4.6 97.1 1.0 C5' M:ADP802 4.7 99.1 1.0

Magnesium binding site 4 out of 8 in the Salmonella Effector Protein Sipa Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Salmonella Effector Protein Sipa Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ N:Mg801 b:100.3 occ:1.00 O2B N:ADP802 2.0 99.8 1.0 O2A N:ADP802 2.1 99.8 1.0 NZ N:LYS18 2.1 106.0 1.0 PA N:ADP802 2.3 99.8 1.0 O1A N:ADP802 2.4 99.8 1.0 PB N:ADP802 2.8 99.8 1.0 O3A N:ADP802 2.9 99.8 1.0 O3B N:ADP802 3.1 99.8 1.0 O N:LEU16 3.4 96.8 1.0 CE N:LYS18 3.5 106.0 1.0 O5' N:ADP802 3.9 99.8 1.0 CD N:LYS18 4.0 106.0 1.0 O1B N:ADP802 4.2 99.8 1.0 CB N:LEU16 4.2 96.8 1.0 N N:LEU16 4.3 96.8 1.0 CA N:GLY13 4.3 104.6 1.0 C N:LEU16 4.4 96.8 1.0 CG N:LYS18 4.4 106.0 1.0 C5' N:ADP802 4.5 99.8 1.0 CA N:LEU16 4.6 96.8 1.0

Magnesium binding site 5 out of 8 in the Salmonella Effector Protein Sipa Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Salmonella Effector Protein Sipa Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg801 b:97.8 occ:1.00 O2B R:ADP802 2.2 100.2 1.0 O3A R:ADP802 2.3 100.2 1.0 PB R:ADP802 2.3 100.2 1.0 O1B R:ADP802 2.3 100.2 1.0 O1A R:ADP802 3.0 100.2 1.0 PA R:ADP802 3.2 100.2 1.0 CA R:GLY156 3.5 101.5 1.0 O3B R:ADP802 3.8 100.2 1.0 O2A R:ADP802 4.0 100.2 1.0 NZ R:LYS18 4.2 111.5 1.0 N R:ASP157 4.3 100.5 1.0 O5' R:ADP802 4.4 100.2 1.0 C R:GLY156 4.5 101.5 1.0 N R:GLY156 4.5 101.5 1.0 NE2 R:GLN137 4.6 104.9 1.0 CA R:GLY301 4.8 102.0 1.0 N R:GLY302 4.9 102.2 1.0 OD2 R:ASP11 5.0 114.0 1.0 OD1 R:ASP154 5.0 102.6 1.0

Magnesium binding site 6 out of 8 in the Salmonella Effector Protein Sipa Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Salmonella Effector Protein Sipa Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg801 b:94.8 occ:1.00 O1B S:ADP802 2.1 96.6 1.0 PB S:ADP802 2.4 96.6 1.0 O2B S:ADP802 2.4 96.6 1.0 O3A S:ADP802 2.5 96.6 1.0 O1A S:ADP802 3.2 96.6 1.0 PA S:ADP802 3.4 96.6 1.0 NZ S:LYS18 3.7 101.8 1.0 O3B S:ADP802 3.9 96.6 1.0 CA S:GLY156 4.2 99.4 1.0 CA S:GLY301 4.3 100.1 1.0 OD2 S:ASP11 4.4 105.1 1.0 O2A S:ADP802 4.4 96.6 1.0 NE2 S:GLN137 4.4 97.7 1.0 O5' S:ADP802 4.5 96.6 1.0 CG2 S:VAL339 4.5 102.7 1.0 CE S:LYS18 4.6 101.8 1.0 N S:GLY302 4.6 96.6 1.0 OD1 S:ASP154 4.6 96.5 1.0

Magnesium binding site 7 out of 8 in the Salmonella Effector Protein Sipa Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Salmonella Effector Protein Sipa Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ U:Mg801 b:101.5 occ:1.00 O2B U:ADP802 2.2 92.9 1.0 PB U:ADP802 2.3 92.9 1.0 O1B U:ADP802 2.3 92.9 1.0 CA U:GLY13 2.5 97.2 1.0 O3B U:ADP802 2.8 92.9 1.0 NZ U:LYS18 3.3 99.7 1.0 N U:SER14 3.4 97.9 1.0 N U:GLY13 3.4 97.2 1.0 C U:GLY13 3.4 97.2 1.0 OD2 U:ASP11 3.7 103.3 1.0 O U:ASN12 3.8 103.9 1.0 OD1 U:ASP11 3.8 103.3 1.0 O3A U:ADP802 3.9 92.9 1.0 CG U:ASP11 3.9 103.3 1.0 C U:ASN12 3.9 103.9 1.0 NE2 U:GLN137 4.3 101.2 1.0 O U:LEU16 4.3 92.5 1.0 CE U:LYS18 4.6 99.7 1.0 O U:GLY13 4.6 97.2 1.0 O2A U:ADP802 4.7 92.9 1.0 PA U:ADP802 4.8 92.9 1.0 CA U:SER14 4.8 97.9 1.0 OG U:SER14 4.9 97.9 1.0 O U:ASP11 5.0 103.3 1.0 CB U:ASP11 5.0 103.3 1.0

Magnesium binding site 8 out of 8 in the Salmonella Effector Protein Sipa Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Salmonella Effector Protein Sipa Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ W:Mg801 b:109.5 occ:1.00 O1B W:ADP802 2.1 104.1 1.0 O2B W:ADP802 2.1 104.1 1.0 PB W:ADP802 2.4 104.1 1.0 NE2 W:GLN137 3.5 112.7 1.0 O3A W:ADP802 3.6 104.1 1.0 O3B W:ADP802 3.6 104.1 1.0 CA W:GLY13 3.7 108.5 1.0 OD2 W:ASP11 3.9 114.2 1.0 NZ W:LYS18 3.9 111.5 1.0 N W:SER14 4.1 106.2 1.0 OD1 W:ASP11 4.2 114.2 1.0 CG W:ASP11 4.4 114.2 1.0 C W:GLY13 4.5 108.5 1.0 O W:ASN12 4.6 113.6 1.0 PA W:ADP802 4.6 104.1 1.0 CD W:GLN137 4.6 112.7 1.0 N W:GLY13 4.7 108.5 1.0 O1A W:ADP802 4.7 104.1 1.0 OG W:SER14 4.8 106.2 1.0 O2A W:ADP802 4.9 104.1 1.0 CA W:GLY156 5.0 104.8 1.0 C W:ASN12 5.0 113.6 1.0

E.Z.Guo, J.E.Galan. Salmonella Effector Protein Sipa Decorated Actin Filament To Be Published.