Magnesium in PDB 8vo6: Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 2)

The binding sites of Magnesium atom in the Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 2) (pdb code 8vo6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 2), PDB code: 8vo6:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 2) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:19.0 occ:1.00 O3B E:ADP401 2.4 21.9 1.0 O2A E:ADP401 3.4 21.9 1.0 PB E:ADP401 3.9 21.9 1.0 OE1 E:GLN137 3.9 14.7 1.0 OD2 E:ASP11 4.2 19.1 1.0 OD2 E:ASP154 4.2 13.1 1.0 PA E:ADP401 4.4 21.9 1.0 O3A E:ADP401 4.4 21.9 1.0 CD E:GLN137 4.5 14.7 1.0 O2B E:ADP401 4.5 21.9 1.0 CG2 E:VAL339 4.5 13.5 1.0 OD1 E:ASP11 4.6 19.1 1.0 NE2 E:GLN137 4.7 14.7 1.0 CA E:GLY156 4.7 14.6 1.0 NZ E:LYS18 4.8 14.9 1.0 CE E:LYS18 4.8 14.9 1.0 CG E:ASP11 4.8 19.1 1.0 O1A E:ADP401 4.8 21.9 1.0 OD1 E:ASP154 4.9 13.1 1.0 CB E:VAL339 4.9 13.5 1.0 O1B E:ADP401 5.0 21.9 1.0 CG E:ASP154 5.0 13.1 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 2) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:21.9 occ:1.00 O3B F:ADP401 2.5 13.1 1.0 OE1 F:GLN137 3.1 11.8 1.0 PB F:ADP401 3.9 13.1 1.0 O2A F:ADP401 4.0 13.1 1.0 OD1 F:ASP11 4.0 11.8 1.0 CD F:GLN137 4.0 11.8 1.0 OD1 F:ASP154 4.1 9.3 1.0 OD2 F:ASP11 4.2 11.8 1.0 NE2 F:GLN137 4.3 11.8 1.0 OD2 F:ASP154 4.3 9.3 1.0 O2B F:ADP401 4.4 13.1 1.0 CG F:ASP11 4.6 11.8 1.0 CG F:ASP154 4.7 9.3 1.0 CA F:GLY13 4.8 10.2 1.0 O3A F:ADP401 4.8 13.1 1.0 NZ F:LYS18 4.8 11.2 1.0 O1B F:ADP401 4.9 13.1 1.0 CG2 F:VAL339 4.9 10.2 1.0 PA F:ADP401 4.9 13.1 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 2) within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:10.1 occ:1.00 O3B G:ADP401 2.4 21.9 1.0 OE1 G:GLN137 3.6 12.0 1.0 PB G:ADP401 3.9 21.9 1.0 OD2 G:ASP11 3.9 13.5 1.0 O2A G:ADP401 4.0 21.9 1.0 CD G:GLN137 4.0 12.0 1.0 OD2 G:ASP154 4.1 11.0 1.0 NE2 G:GLN137 4.1 12.0 1.0 OD1 G:ASP11 4.3 13.5 1.0 CG G:ASP11 4.5 13.5 1.0 O3A G:ADP401 4.6 21.9 1.0 O1B G:ADP401 4.6 21.9 1.0 O2B G:ADP401 4.8 21.9 1.0 CA G:GLY13 4.8 12.0 1.0 CA G:GLY156 4.8 12.5 1.0 OD1 G:ASP154 4.9 11.0 1.0 PA G:ADP401 4.9 21.9 1.0 CG2 G:VAL339 4.9 11.3 1.0 CG G:ASP154 4.9 11.0 1.0

R.Gong, M.J.Reynolds, K.Hamilton, G.M.Alushin. Fascin Structural Plasticity Mediates Flexible Actin Bundle Construction Nat.Struct.Mol.Biol. 2025.
ISSN: ESSN 1545-9985