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Magnesium in PDB 8ww6: Structure of Atp-Rs-Form Asfvprimpol Hexamer

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Atp-Rs-Form Asfvprimpol Hexamer (pdb code 8ww6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structure of Atp-Rs-Form Asfvprimpol Hexamer, PDB code: 8ww6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 8ww6

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Magnesium binding site 1 out of 6 in the Structure of Atp-Rs-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Atp-Rs-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1002

b:193.8
occ:1.00
 O3G B:AGS1001 2.0 183.6 1.0
OG1 B:THR643 2.0 157.7 1.0
O2B B:AGS1001 2.0 183.6 1.0
O1A B:AGS1001 2.1 183.6 1.0
O3B B:AGS1001 2.1 183.6 1.0
PB B:AGS1001 2.3 183.6 1.0
PG B:AGS1001 2.5 183.6 1.0
O3A B:AGS1001 2.7 183.6 1.0
PA B:AGS1001 2.8 183.6 1.0
CG2 B:THR643 2.8 157.7 1.0
CB B:THR643 2.9 157.7 1.0
O2A B:AGS1001 3.5 183.6 1.0
O2G B:AGS1001 3.6 183.6 1.0
N B:THR643 3.7 157.7 1.0
O1B B:AGS1001 3.8 183.6 1.0
CA B:THR643 3.9 157.7 1.0
S1G B:AGS1001 4.1 183.6 1.0
O5' B:AGS1001 4.2 183.6 1.0
N B:LYS642 4.7 161.4 1.0
NH2 C:ARG752 4.7 171.2 1.0
N B:GLY641 4.8 171.7 1.0
C B:THR643 4.8 157.7 1.0
N B:PHE644 4.8 146.2 1.0
CA B:GLY641 4.8 171.7 1.0
C5' B:AGS1001 4.9 183.6 1.0
C B:GLY641 4.9 171.7 1.0
C B:LYS642 4.9 161.4 1.0

Magnesium binding site 2 out of 6 in 8ww6

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Magnesium binding site 2 out of 6 in the Structure of Atp-Rs-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Atp-Rs-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:195.2
occ:1.00
 O2B A:AGS1001 2.0 197.8 1.0
OG1 A:THR643 2.1 167.7 1.0
N A:THR643 2.1 167.7 1.0
O1B A:AGS1001 2.3 197.8 1.0
PB A:AGS1001 2.4 197.8 1.0
CB A:THR643 2.5 167.7 1.0
CG2 A:THR643 2.6 167.7 1.0
CA A:THR643 2.8 167.7 1.0
O3B A:AGS1001 2.9 197.8 1.0
O3G A:AGS1001 3.1 197.8 1.0
N A:LYS642 3.2 177.7 1.0
C A:LYS642 3.2 177.7 1.0
PG A:AGS1001 3.3 197.8 1.0
N A:PHE644 3.4 149.3 1.0
C A:GLY641 3.5 173.4 1.0
C A:THR643 3.5 167.7 1.0
O2G A:AGS1001 3.5 197.8 1.0
CA A:LYS642 3.7 177.7 1.0
O3A A:AGS1001 3.9 197.8 1.0
CA A:GLY641 4.0 173.4 1.0
O A:GLY641 4.0 173.4 1.0
CB A:LYS642 4.2 177.7 1.0
O1A A:AGS1001 4.3 197.8 1.0
O A:LYS642 4.3 177.7 1.0
N A:GLY641 4.5 173.4 1.0
O A:THR643 4.6 167.7 1.0
PA A:AGS1001 4.8 197.8 1.0
CA A:PHE644 4.8 149.3 1.0

Magnesium binding site 3 out of 6 in 8ww6

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Magnesium binding site 3 out of 6 in the Structure of Atp-Rs-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Atp-Rs-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1002

b:192.1
occ:1.00
 CG2 C:THR643 1.7 153.0 1.0
O3G C:AGS1001 1.8 182.9 1.0
OG1 C:THR643 2.2 153.0 1.0
PG C:AGS1001 2.2 182.9 1.0
O2B C:AGS1001 2.3 182.9 1.0
CB C:THR643 2.4 153.0 1.0
O3B C:AGS1001 2.6 182.9 1.0
S1G C:AGS1001 2.8 182.9 1.0
PB C:AGS1001 3.0 182.9 1.0
CA C:THR643 3.6 153.0 1.0
N C:THR643 3.6 153.0 1.0
O2G C:AGS1001 3.8 182.9 1.0
O3A C:AGS1001 4.1 182.9 1.0
O1B C:AGS1001 4.1 182.9 1.0
O1A C:AGS1001 4.1 182.9 1.0
PA C:AGS1001 4.4 182.9 1.0
O2A C:AGS1001 4.5 182.9 1.0
C C:THR643 4.7 153.0 1.0
CG C:LYS642 4.7 152.4 1.0
C C:LYS642 4.9 152.4 1.0
NH2 C:ARG647 4.9 136.2 1.0
N C:PHE644 5.0 139.3 1.0
N C:LYS642 5.0 152.4 1.0

Magnesium binding site 4 out of 6 in 8ww6

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Magnesium binding site 4 out of 6 in the Structure of Atp-Rs-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Atp-Rs-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1002

b:168.6
occ:1.00
 O2B D:AGS1001 2.1 163.1 1.0
OG1 D:THR643 2.4 141.4 1.0
CG2 D:THR643 2.6 141.4 1.0
O3B D:AGS1001 2.7 163.1 1.0
O3G D:AGS1001 2.8 163.1 1.0
PB D:AGS1001 2.9 163.1 1.0
CB D:THR643 3.1 141.4 1.0
PG D:AGS1001 3.2 163.1 1.0
O3A D:AGS1001 3.6 163.1 1.0
N D:THR643 4.0 141.4 1.0
S1G D:AGS1001 4.0 163.1 1.0
O1A D:AGS1001 4.1 163.1 1.0
CA D:THR643 4.1 141.4 1.0
O1B D:AGS1001 4.2 163.1 1.0
PA D:AGS1001 4.3 163.1 1.0
CG D:LYS642 4.4 151.8 1.0
O2G D:AGS1001 4.7 163.1 1.0
O2A D:AGS1001 4.7 163.1 1.0
CB D:GLU693 5.0 186.6 1.0

Magnesium binding site 5 out of 6 in 8ww6

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Magnesium binding site 5 out of 6 in the Structure of Atp-Rs-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Atp-Rs-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1002

b:200.7
occ:1.00
 O3G E:AGS1001 1.9 183.8 1.0
O1A E:AGS1001 2.0 183.8 1.0
OG1 E:THR643 2.0 154.0 1.0
O2B E:AGS1001 2.1 183.8 1.0
O3B E:AGS1001 2.3 183.8 1.0
PB E:AGS1001 2.3 183.8 1.0
PA E:AGS1001 2.3 183.8 1.0
O3A E:AGS1001 2.4 183.8 1.0
PG E:AGS1001 2.4 183.8 1.0
O2A E:AGS1001 2.7 183.8 1.0
O2G E:AGS1001 3.0 183.8 1.0
CB E:THR643 3.0 154.0 1.0
CG2 E:THR643 3.1 154.0 1.0
O1B E:AGS1001 3.8 183.8 1.0
O5' E:AGS1001 3.8 183.8 1.0
N E:THR643 3.8 154.0 1.0
CA E:THR643 4.0 154.0 1.0
S1G E:AGS1001 4.2 183.8 1.0
O E:GLY638 4.5 184.8 1.0
N E:PHE644 4.5 136.0 1.0
NH2 E:ARG647 4.6 130.8 1.0
CD1 E:ILE781 4.6 168.2 1.0
N E:GLY641 4.7 157.8 1.0
C5' E:AGS1001 4.7 183.8 1.0
C E:THR643 4.7 154.0 1.0
CA E:GLY641 4.7 157.8 1.0
N E:LYS642 4.8 148.7 1.0
C E:GLY641 4.9 157.8 1.0

Magnesium binding site 6 out of 6 in 8ww6

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Magnesium binding site 6 out of 6 in the Structure of Atp-Rs-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Atp-Rs-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1002

b:203.4
occ:1.00
 OG1 F:THR643 2.0 168.9 1.0
O3B F:AGS1001 2.0 191.2 1.0
O2B F:AGS1001 2.1 191.2 1.0
O3G F:AGS1001 2.3 191.2 1.0
PG F:AGS1001 2.3 191.2 1.0
PB F:AGS1001 2.4 191.2 1.0
CG2 F:THR643 2.4 168.9 1.0
CB F:THR643 2.7 168.9 1.0
S1G F:AGS1001 2.9 191.2 1.0
O1B F:AGS1001 3.0 191.2 1.0
N F:THR643 3.8 168.9 1.0
CA F:THR643 3.8 168.9 1.0
O3A F:AGS1001 3.8 191.2 1.0
O2G F:AGS1001 3.8 191.2 1.0
O1A F:AGS1001 3.9 191.2 1.0
NH1 F:ARG647 4.3 144.7 1.0
PA F:AGS1001 4.4 191.2 1.0
C F:THR643 4.6 168.9 1.0
N F:PHE644 4.7 150.9 1.0
N F:LYS642 5.0 156.8 1.0

Reference:

T.H.Shi, Y.Y.Guo, R.H.Yan. Structure of Adp-Form Asfvprimpol Hexamer To Be Published.
Page generated: Fri Aug 15 20:04:18 2025

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