Magnesium in PDB 8y03: Crystal Structure of LBCAS12A-Crrna Complex

The structure of Crystal Structure of LBCAS12A-Crrna Complex, PDB code: 8y03 was solved by X.Lin, J.Chen, L.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.66 / 2.93
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	168.259, 83.221, 124.304, 90, 106.21, 90
R / Rfree (%)	26.9 / 28.9

The binding sites of Magnesium atom in the Crystal Structure of LBCAS12A-Crrna Complex (pdb code 8y03). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of LBCAS12A-Crrna Complex, PDB code: 8y03:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of LBCAS12A-Crrna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of LBCAS12A-Crrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:19.6 occ:0.00 O A:THR716 2.3 27.3 1.0 OP2 G:A19 3.0 13.5 1.0 C A:THR716 3.4 21.0 1.0 CA A:PRO717 3.7 18.8 1.0 C A:PRO717 3.8 18.6 1.0 OD1 A:ASP708 3.8 31.7 1.0 N A:ASN718 3.8 19.2 1.0 N A:PRO717 4.0 22.0 1.0 OD1 A:ASN718 4.1 17.4 1.0 O A:PRO717 4.3 17.8 1.0 P G:A19 4.4 13.2 1.0 OP2 G:U18 4.5 14.7 1.0 CA A:THR716 4.6 14.7 1.0 CG A:ASN718 4.7 16.9 1.0 CG A:ASP708 4.7 30.0 1.0 CA A:ASN718 4.7 20.2 1.0 N A:THR716 4.8 21.6 1.0 OD2 A:ASP708 4.8 29.9 1.0 O5' G:A19 4.8 13.8 1.0 OP1 G:U18 4.8 24.6 1.0 N7 G:A19 4.9 12.8 1.0 C A:GLY715 4.9 32.1 1.0 OP2 G:G20 4.9 13.5 1.0 NZ A:LYS960 5.0 21.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of LBCAS12A-Crrna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of LBCAS12A-Crrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg101 b:11.4 occ:0.00 OP2 G:A10 4.0 8.9 1.0 OP2 G:A4 4.1 9.7 1.0 O4 G:U5 4.2 19.2 1.0 OP2 G:U9 4.4 21.4 1.0 N7 G:A10 4.6 9.0 1.0 C5 G:C11 4.9 10.8 1.0

J.Chen, X.Lin, W.Xiang, Y.Chen, Y.Zhao, L.Huang, L.Liu. Dna Target Binding-Induced Pre-Crrna Processing in Type II and V Crispr-Cas Systems. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 39676682
DOI: 10.1093/NAR/GKAE1241