Magnesium in PDB 8y1q: Crystal Structure of Aquifex Aeolicus Dutpase Complexed with Dump.

All present enzymatic activity of Crystal Structure of Aquifex Aeolicus Dutpase Complexed with Dump.:
3.6.1.23;

The structure of Crystal Structure of Aquifex Aeolicus Dutpase Complexed with Dump., PDB code: 8y1q was solved by K.Fukui, T.Murakawa, T.Yano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.32 / 2.42
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	61.26, 61.26, 112.66, 90, 90, 90
R / Rfree (%)	23.3 / 27.3

The binding sites of Magnesium atom in the Crystal Structure of Aquifex Aeolicus Dutpase Complexed with Dump. (pdb code 8y1q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Aquifex Aeolicus Dutpase Complexed with Dump., PDB code: 8y1q:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Aquifex Aeolicus Dutpase Complexed with Dump.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Aquifex Aeolicus Dutpase Complexed with Dump. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:90.7 occ:1.00 O5' B:DU201 3.7 89.2 1.0 OG A:SER70 4.1 71.2 1.0 OP1 B:DU201 4.2 86.5 1.0 O4' B:DU201 4.5 78.5 1.0 C5' B:DU201 4.5 88.2 1.0 P B:DU201 4.6 100.8 1.0 C4' B:DU201 4.6 77.3 1.0 OP3 B:DU201 4.9 93.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Aquifex Aeolicus Dutpase Complexed with Dump.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Aquifex Aeolicus Dutpase Complexed with Dump. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg202 b:109.4 occ:1.00 O A:HOH302 2.3 100.0 1.0 OP2 A:DU201 3.9 96.9 1.0 O5' A:DU201 4.5 107.8 1.0 OG C:SER70 4.5 88.9 1.0 P A:DU201 4.8 105.1 1.0 CA C:GLY71 5.0 75.0 1.0

K.Fukui, N.Kondo, T.Murakawa, S.Baba, T.Kumasaka, T.Yano. Dutp Pyrophosphatases From Hyperthermophilic Eubacterium and Archaeon: Structural and Functional Examinations on the Suitability For Pcr Application. Protein Sci. V. 33 E5185 2024.
ISSN: ESSN 1469-896X
PubMed: 39440877
DOI: 10.1002/PRO.5185