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Magnesium in PDB 8y1t: Crystal Structure of Trypanosoma Brucei Gambiense Glycerol Kinase Complex with Adp and G3P

Enzymatic activity of Crystal Structure of Trypanosoma Brucei Gambiense Glycerol Kinase Complex with Adp and G3P

All present enzymatic activity of Crystal Structure of Trypanosoma Brucei Gambiense Glycerol Kinase Complex with Adp and G3P:
2.7.1.30;

Protein crystallography data

The structure of Crystal Structure of Trypanosoma Brucei Gambiense Glycerol Kinase Complex with Adp and G3P, PDB code: 8y1t was solved by E.O.Balogun, D.K.Inaoka, M.Ichinose, T.Chishima, S.Harada, K.Kita, T.Shiba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.86 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.563, 121.741, 154.278, 90, 90, 90
R / Rfree (%) 19.2 / 25

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Trypanosoma Brucei Gambiense Glycerol Kinase Complex with Adp and G3P (pdb code 8y1t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Trypanosoma Brucei Gambiense Glycerol Kinase Complex with Adp and G3P, PDB code: 8y1t:

Magnesium binding site 1 out of 1 in 8y1t

Go back to Magnesium Binding Sites List in 8y1t
Magnesium binding site 1 out of 1 in the Crystal Structure of Trypanosoma Brucei Gambiense Glycerol Kinase Complex with Adp and G3P


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Trypanosoma Brucei Gambiense Glycerol Kinase Complex with Adp and G3P within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg603

b:92.6
occ:1.00
 O1B A:ADP602 3.0 98.2 0.8
O3B A:ADP602 3.4 101.0 0.8
PB A:ADP602 3.5 111.4 0.8
O A:GLY277 3.7 63.0 1.0
O2B A:ADP602 3.8 115.7 0.8
N A:GLY277 3.9 61.0 1.0
N A:THR276 4.0 61.1 1.0
CE2 A:PHE279 4.1 95.1 1.0
CD2 A:PHE279 4.2 88.5 1.0
CA A:GLY275 4.2 59.8 1.0
C A:GLY277 4.3 64.2 1.0
C A:GLY275 4.4 61.0 1.0
CA A:GLY277 4.6 59.8 1.0
N A:GLY275 4.7 59.2 1.0
CB A:THR276 4.7 67.7 1.0
CA A:THR276 4.7 66.2 1.0
C A:THR276 4.9 64.1 1.0
CG2 A:THR273 4.9 60.4 1.0

Reference:

E.O.Balogun, D.K.Inaoka, M.Ichinose, T.Chishima, S.Harada, K.Kita, T.Shiba. Crystal Structure of Trypanosoma Brucei Gambiense Glycerol Kinase Complex with Adp and G3P To Be Published.
Page generated: Fri Aug 15 21:18:10 2025

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