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Magnesium in PDB 8y9n: CAS12H1-Crrna-Dsdna Ternary Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the CAS12H1-Crrna-Dsdna Ternary Complex (pdb code 8y9n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the CAS12H1-Crrna-Dsdna Ternary Complex, PDB code: 8y9n:

Magnesium binding site 1 out of 1 in 8y9n

Go back to Magnesium Binding Sites List in 8y9n
Magnesium binding site 1 out of 1 in the CAS12H1-Crrna-Dsdna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of CAS12H1-Crrna-Dsdna Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:30.0
occ:1.00
OP1 D:DT13 2.4 20.0 1.0
OD1 A:ASN467 2.5 54.3 1.0
OD2 A:ASP465 2.6 49.6 1.0
OD1 A:ASP740 2.7 57.5 1.0
CG A:ASP465 3.4 49.6 1.0
CG A:ASN467 3.5 54.3 1.0
OD1 A:ASP465 3.5 49.6 1.0
P D:DT13 3.8 20.0 1.0
ND2 A:ASN467 3.8 54.3 1.0
CG A:ASP740 3.9 57.5 1.0
O A:ALA739 4.0 59.2 1.0
OP2 D:DT13 4.3 20.0 1.0
CA A:ASP740 4.4 57.5 1.0
OG A:SER706 4.4 60.0 1.0
NH2 A:ARG718 4.6 70.2 1.0
O5' D:DT13 4.7 20.0 1.0
CB A:ASP740 4.7 57.5 1.0
CB A:ASP465 4.7 49.6 1.0
O3' D:DT12 4.8 20.0 1.0
C5' D:DT13 4.8 20.0 1.0
OD2 A:ASP740 4.8 57.5 1.0
CB A:ASN467 4.8 54.3 1.0
C A:ALA739 4.9 59.2 1.0

Reference:

W.W.Zheng, M.X.Liu, S.Y.Ouyang. Structure of CAS12H1-Crrna-Target Dna at 2.76 Angstroms Resolution To Be Published.
Page generated: Fri Aug 15 21:21:40 2025

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