Magnesium in PDB 8ydm: Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
Other elements in 8ydm:
The structure of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
(pdb code 8ydm). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 24 binding sites of Magnesium where determined in the
Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus, PDB code: 8ydm:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 24 in 8ydm
Go back to
Magnesium Binding Sites List in 8ydm
Magnesium binding site 1 out
of 24 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg101
b:36.5
occ:1.00
|
MG
|
A:BCL101
|
0.0
|
36.5
|
1.0
|
|
ND
|
A:BCL101
|
1.9
|
36.5
|
1.0
|
|
NB
|
A:BCL101
|
2.0
|
36.5
|
1.0
|
|
NC
|
A:BCL101
|
2.1
|
36.5
|
1.0
|
|
NA
|
A:BCL101
|
2.1
|
36.5
|
1.0
|
|
NE2
|
A:HIS26
|
2.3
|
61.7
|
1.0
|
|
C4D
|
A:BCL101
|
2.8
|
36.5
|
1.0
|
|
C1B
|
A:BCL101
|
2.9
|
36.5
|
1.0
|
|
C4B
|
A:BCL101
|
3.0
|
36.5
|
1.0
|
|
C1C
|
A:BCL101
|
3.0
|
36.5
|
1.0
|
|
CE1
|
A:HIS26
|
3.0
|
72.9
|
1.0
|
|
C4A
|
A:BCL101
|
3.1
|
36.5
|
1.0
|
|
C1D
|
A:BCL101
|
3.1
|
36.5
|
1.0
|
|
C1A
|
A:BCL101
|
3.1
|
36.5
|
1.0
|
|
C4C
|
A:BCL101
|
3.1
|
36.5
|
1.0
|
|
CHB
|
A:BCL101
|
3.3
|
36.5
|
1.0
|
|
CHA
|
A:BCL101
|
3.3
|
36.5
|
1.0
|
|
CHC
|
A:BCL101
|
3.4
|
36.5
|
1.0
|
|
CD2
|
A:HIS26
|
3.5
|
57.5
|
1.0
|
|
CHD
|
A:BCL101
|
3.5
|
36.5
|
1.0
|
|
CBB
|
D:BCL103
|
3.8
|
33.4
|
1.0
|
|
C3D
|
A:BCL101
|
4.1
|
36.5
|
1.0
|
|
C2B
|
A:BCL101
|
4.1
|
36.5
|
1.0
|
|
C3B
|
A:BCL101
|
4.2
|
36.5
|
1.0
|
|
ND1
|
A:HIS26
|
4.2
|
71.4
|
1.0
|
|
C2D
|
A:BCL101
|
4.2
|
36.5
|
1.0
|
|
C2C
|
A:BCL101
|
4.3
|
36.5
|
1.0
|
|
C3C
|
A:BCL101
|
4.4
|
36.5
|
1.0
|
|
C3A
|
A:BCL101
|
4.4
|
36.5
|
1.0
|
|
C2A
|
A:BCL101
|
4.4
|
36.5
|
1.0
|
|
CBO
|
B:U4Z101
|
4.5
|
35.6
|
1.0
|
|
CG
|
A:HIS26
|
4.5
|
59.9
|
1.0
|
|
CMB
|
D:BCL103
|
4.7
|
33.4
|
1.0
|
|
CBD
|
A:BCL101
|
4.8
|
36.5
|
1.0
|
|
CAB
|
D:BCL103
|
4.9
|
33.4
|
1.0
|
|
Magnesium binding site 2 out
of 24 in 8ydm
Go back to
Magnesium Binding Sites List in 8ydm
Magnesium binding site 2 out
of 24 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg103
b:37.8
occ:1.00
|
MG
|
A:BCL103
|
0.0
|
37.8
|
1.0
|
|
ND
|
A:BCL103
|
1.9
|
37.8
|
1.0
|
|
NB
|
A:BCL103
|
2.0
|
37.8
|
1.0
|
|
NC
|
A:BCL103
|
2.1
|
37.8
|
1.0
|
|
NA
|
A:BCL103
|
2.1
|
37.8
|
1.0
|
|
C4D
|
A:BCL103
|
2.8
|
37.8
|
1.0
|
|
C1B
|
A:BCL103
|
2.9
|
37.8
|
1.0
|
|
C4B
|
A:BCL103
|
3.0
|
37.8
|
1.0
|
|
C1C
|
A:BCL103
|
3.0
|
37.8
|
1.0
|
|
NE2
|
B:HIS42
|
3.0
|
73.7
|
1.0
|
|
C4A
|
A:BCL103
|
3.0
|
37.8
|
1.0
|
|
C1D
|
A:BCL103
|
3.1
|
37.8
|
1.0
|
|
C1A
|
A:BCL103
|
3.1
|
37.8
|
1.0
|
|
C4C
|
A:BCL103
|
3.1
|
37.8
|
1.0
|
|
CHB
|
A:BCL103
|
3.3
|
37.8
|
1.0
|
|
CHA
|
A:BCL103
|
3.3
|
37.8
|
1.0
|
|
CHC
|
A:BCL103
|
3.4
|
37.8
|
1.0
|
|
CHD
|
A:BCL103
|
3.5
|
37.8
|
1.0
|
|
CE1
|
B:HIS42
|
3.7
|
71.3
|
1.0
|
|
CG2
|
C:VAL34
|
3.9
|
65.2
|
1.0
|
|
C3D
|
A:BCL103
|
4.1
|
37.8
|
1.0
|
|
C2B
|
A:BCL103
|
4.1
|
37.8
|
1.0
|
|
C3B
|
A:BCL103
|
4.1
|
37.8
|
1.0
|
|
CD2
|
B:HIS42
|
4.2
|
65.8
|
1.0
|
|
C2D
|
A:BCL103
|
4.2
|
37.8
|
1.0
|
|
CG2
|
A:ILE25
|
4.3
|
63.4
|
1.0
|
|
CD1
|
A:ILE25
|
4.3
|
64.0
|
1.0
|
|
C2C
|
A:BCL103
|
4.4
|
37.8
|
1.0
|
|
C3A
|
A:BCL103
|
4.4
|
37.8
|
1.0
|
|
C2A
|
A:BCL103
|
4.4
|
37.8
|
1.0
|
|
C3C
|
A:BCL103
|
4.4
|
37.8
|
1.0
|
|
CG1
|
C:VAL34
|
4.5
|
68.0
|
1.0
|
|
CBD
|
A:BCL103
|
4.8
|
37.8
|
1.0
|
|
CMA
|
A:BCL103
|
4.9
|
37.8
|
1.0
|
|
CB
|
C:VAL34
|
4.9
|
61.1
|
1.0
|
|
ND1
|
B:HIS42
|
5.0
|
73.0
|
1.0
|
|
Magnesium binding site 3 out
of 24 in 8ydm
Go back to
Magnesium Binding Sites List in 8ydm
Magnesium binding site 3 out
of 24 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg104
b:56.8
occ:1.00
|
MG
|
A:BCL104
|
0.0
|
56.8
|
1.0
|
|
ND
|
A:BCL104
|
1.9
|
56.8
|
1.0
|
|
NB
|
A:BCL104
|
2.0
|
56.8
|
1.0
|
|
NC
|
A:BCL104
|
2.1
|
56.8
|
1.0
|
|
NA
|
A:BCL104
|
2.1
|
56.8
|
1.0
|
|
NE2
|
B:HIS24
|
2.7
|
92.4
|
1.0
|
|
C4D
|
A:BCL104
|
2.8
|
56.8
|
1.0
|
|
C1B
|
A:BCL104
|
2.9
|
56.8
|
1.0
|
|
C4B
|
A:BCL104
|
3.0
|
56.8
|
1.0
|
|
C1C
|
A:BCL104
|
3.0
|
56.8
|
1.0
|
|
C4A
|
A:BCL104
|
3.0
|
56.8
|
1.0
|
|
C1D
|
A:BCL104
|
3.1
|
56.8
|
1.0
|
|
C1A
|
A:BCL104
|
3.1
|
56.8
|
1.0
|
|
C4C
|
A:BCL104
|
3.1
|
56.8
|
1.0
|
|
CHA
|
A:BCL104
|
3.3
|
56.8
|
1.0
|
|
CHB
|
A:BCL104
|
3.3
|
56.8
|
1.0
|
|
CHC
|
A:BCL104
|
3.4
|
56.8
|
1.0
|
|
CHD
|
A:BCL104
|
3.5
|
56.8
|
1.0
|
|
CE1
|
B:HIS24
|
3.6
|
88.7
|
1.0
|
|
CD2
|
B:HIS24
|
3.6
|
87.5
|
1.0
|
|
C3D
|
A:BCL104
|
4.1
|
56.8
|
1.0
|
|
C2B
|
A:BCL104
|
4.1
|
56.8
|
1.0
|
|
C3B
|
A:BCL104
|
4.1
|
56.8
|
1.0
|
|
C2D
|
A:BCL104
|
4.2
|
56.8
|
1.0
|
|
C3A
|
A:BCL104
|
4.3
|
56.8
|
1.0
|
|
C2C
|
A:BCL104
|
4.3
|
56.8
|
1.0
|
|
C2A
|
A:BCL104
|
4.4
|
56.8
|
1.0
|
|
C3C
|
A:BCL104
|
4.5
|
56.8
|
1.0
|
|
CMA
|
A:BCL104
|
4.7
|
56.8
|
1.0
|
|
ND1
|
B:HIS24
|
4.7
|
81.3
|
1.0
|
|
CG
|
B:HIS24
|
4.8
|
79.5
|
1.0
|
|
CBD
|
A:BCL104
|
4.8
|
56.8
|
1.0
|
|
Magnesium binding site 4 out
of 24 in 8ydm
Go back to
Magnesium Binding Sites List in 8ydm
Magnesium binding site 4 out
of 24 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg101
b:31.6
occ:1.00
|
MG
|
D:BCL101
|
0.0
|
31.6
|
1.0
|
|
ND
|
D:BCL101
|
1.9
|
31.6
|
1.0
|
|
NB
|
D:BCL101
|
2.0
|
31.6
|
1.0
|
|
NC
|
D:BCL101
|
2.1
|
31.6
|
1.0
|
|
NA
|
D:BCL101
|
2.1
|
31.6
|
1.0
|
|
NE2
|
D:HIS26
|
2.5
|
64.1
|
1.0
|
|
C4D
|
D:BCL101
|
2.8
|
31.6
|
1.0
|
|
C1B
|
D:BCL101
|
2.9
|
31.6
|
1.0
|
|
C4B
|
D:BCL101
|
3.0
|
31.6
|
1.0
|
|
C1C
|
D:BCL101
|
3.0
|
31.6
|
1.0
|
|
C4A
|
D:BCL101
|
3.1
|
31.6
|
1.0
|
|
C1D
|
D:BCL101
|
3.1
|
31.6
|
1.0
|
|
C1A
|
D:BCL101
|
3.1
|
31.6
|
1.0
|
|
C4C
|
D:BCL101
|
3.1
|
31.6
|
1.0
|
|
CE1
|
D:HIS26
|
3.3
|
61.9
|
1.0
|
|
CHB
|
D:BCL101
|
3.3
|
31.6
|
1.0
|
|
CHA
|
D:BCL101
|
3.4
|
31.6
|
1.0
|
|
CHC
|
D:BCL101
|
3.4
|
31.6
|
1.0
|
|
CHD
|
D:BCL101
|
3.5
|
31.6
|
1.0
|
|
CD2
|
D:HIS26
|
3.6
|
62.8
|
1.0
|
|
CBB
|
F:BCL101
|
4.0
|
30.3
|
1.0
|
|
C3D
|
D:BCL101
|
4.1
|
31.6
|
1.0
|
|
C2B
|
D:BCL101
|
4.1
|
31.6
|
1.0
|
|
C3B
|
D:BCL101
|
4.2
|
31.6
|
1.0
|
|
C2D
|
D:BCL101
|
4.2
|
31.6
|
1.0
|
|
C2C
|
D:BCL101
|
4.3
|
31.6
|
1.0
|
|
C3C
|
D:BCL101
|
4.3
|
31.6
|
1.0
|
|
C3A
|
D:BCL101
|
4.4
|
31.6
|
1.0
|
|
CMB
|
F:BCL101
|
4.4
|
30.3
|
1.0
|
|
C2A
|
D:BCL101
|
4.4
|
31.6
|
1.0
|
|
ND1
|
D:HIS26
|
4.5
|
60.7
|
1.0
|
|
CBO
|
G:U4Z101
|
4.7
|
35.6
|
1.0
|
|
CG
|
D:HIS26
|
4.7
|
56.7
|
1.0
|
|
CBD
|
D:BCL101
|
4.8
|
31.6
|
1.0
|
|
C2B
|
F:BCL101
|
4.9
|
30.3
|
1.0
|
|
Magnesium binding site 5 out
of 24 in 8ydm
Go back to
Magnesium Binding Sites List in 8ydm
Magnesium binding site 5 out
of 24 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg103
b:33.4
occ:1.00
|
MG
|
D:BCL103
|
0.0
|
33.4
|
1.0
|
|
ND
|
D:BCL103
|
1.9
|
33.4
|
1.0
|
|
NB
|
D:BCL103
|
2.0
|
33.4
|
1.0
|
|
NA
|
D:BCL103
|
2.0
|
33.4
|
1.0
|
|
NC
|
D:BCL103
|
2.1
|
33.4
|
1.0
|
|
C4D
|
D:BCL103
|
2.8
|
33.4
|
1.0
|
|
NE2
|
E:HIS42
|
2.8
|
66.2
|
1.0
|
|
C1B
|
D:BCL103
|
2.9
|
33.4
|
1.0
|
|
C4A
|
D:BCL103
|
3.0
|
33.4
|
1.0
|
|
C4B
|
D:BCL103
|
3.0
|
33.4
|
1.0
|
|
C1C
|
D:BCL103
|
3.0
|
33.4
|
1.0
|
|
C1A
|
D:BCL103
|
3.0
|
33.4
|
1.0
|
|
C1D
|
D:BCL103
|
3.1
|
33.4
|
1.0
|
|
C4C
|
D:BCL103
|
3.1
|
33.4
|
1.0
|
|
CHA
|
D:BCL103
|
3.3
|
33.4
|
1.0
|
|
CHB
|
D:BCL103
|
3.3
|
33.4
|
1.0
|
|
CHC
|
D:BCL103
|
3.4
|
33.4
|
1.0
|
|
CE1
|
E:HIS42
|
3.5
|
54.3
|
1.0
|
|
CHD
|
D:BCL103
|
3.5
|
33.4
|
1.0
|
|
CMB
|
A:BCL101
|
3.8
|
36.5
|
1.0
|
|
CD2
|
E:HIS42
|
4.0
|
55.8
|
1.0
|
|
C3D
|
D:BCL103
|
4.0
|
33.4
|
1.0
|
|
C2B
|
D:BCL103
|
4.1
|
33.4
|
1.0
|
|
CBB
|
A:BCL101
|
4.1
|
36.5
|
1.0
|
|
C3B
|
D:BCL103
|
4.1
|
33.4
|
1.0
|
|
C2D
|
D:BCL103
|
4.2
|
33.4
|
1.0
|
|
C2A
|
D:BCL103
|
4.3
|
33.4
|
1.0
|
|
C3A
|
D:BCL103
|
4.4
|
33.4
|
1.0
|
|
CAB
|
A:BCL101
|
4.4
|
36.5
|
1.0
|
|
C2C
|
D:BCL103
|
4.4
|
33.4
|
1.0
|
|
CG2
|
D:ILE25
|
4.4
|
58.5
|
1.0
|
|
C3C
|
D:BCL103
|
4.5
|
33.4
|
1.0
|
|
C2B
|
A:BCL101
|
4.5
|
36.5
|
1.0
|
|
CD1
|
D:ILE25
|
4.6
|
56.7
|
1.0
|
|
C3B
|
A:BCL101
|
4.7
|
36.5
|
1.0
|
|
ND1
|
E:HIS42
|
4.7
|
46.9
|
1.0
|
|
CBD
|
D:BCL103
|
4.7
|
33.4
|
1.0
|
|
CAA
|
D:BCL103
|
5.0
|
33.4
|
1.0
|
|
Magnesium binding site 6 out
of 24 in 8ydm
Go back to
Magnesium Binding Sites List in 8ydm
Magnesium binding site 6 out
of 24 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg101
b:44.2
occ:1.00
|
MG
|
E:BCL101
|
0.0
|
44.2
|
1.0
|
|
ND
|
E:BCL101
|
1.9
|
44.2
|
1.0
|
|
NB
|
E:BCL101
|
2.0
|
44.2
|
1.0
|
|
NE2
|
E:HIS24
|
2.0
|
69.4
|
1.0
|
|
NC
|
E:BCL101
|
2.1
|
44.2
|
1.0
|
|
NA
|
E:BCL101
|
2.1
|
44.2
|
1.0
|
|
C4D
|
E:BCL101
|
2.8
|
44.2
|
1.0
|
|
CD2
|
E:HIS24
|
2.9
|
64.0
|
1.0
|
|
C1B
|
E:BCL101
|
2.9
|
44.2
|
1.0
|
|
C4B
|
E:BCL101
|
3.0
|
44.2
|
1.0
|
|
C1C
|
E:BCL101
|
3.0
|
44.2
|
1.0
|
|
C4A
|
E:BCL101
|
3.1
|
44.2
|
1.0
|
|
CE1
|
E:HIS24
|
3.1
|
64.5
|
1.0
|
|
C1D
|
E:BCL101
|
3.1
|
44.2
|
1.0
|
|
C1A
|
E:BCL101
|
3.1
|
44.2
|
1.0
|
|
C4C
|
E:BCL101
|
3.1
|
44.2
|
1.0
|
|
CHA
|
E:BCL101
|
3.3
|
44.2
|
1.0
|
|
CHB
|
E:BCL101
|
3.3
|
44.2
|
1.0
|
|
CHC
|
E:BCL101
|
3.4
|
44.2
|
1.0
|
|
CHD
|
E:BCL101
|
3.5
|
44.2
|
1.0
|
|
C3D
|
E:BCL101
|
4.1
|
44.2
|
1.0
|
|
CG
|
E:HIS24
|
4.1
|
63.1
|
1.0
|
|
C2B
|
E:BCL101
|
4.1
|
44.2
|
1.0
|
|
ND1
|
E:HIS24
|
4.1
|
59.5
|
1.0
|
|
C3B
|
E:BCL101
|
4.1
|
44.2
|
1.0
|
|
C2D
|
E:BCL101
|
4.2
|
44.2
|
1.0
|
|
C3A
|
E:BCL101
|
4.3
|
44.2
|
1.0
|
|
C2C
|
E:BCL101
|
4.3
|
44.2
|
1.0
|
|
C2A
|
E:BCL101
|
4.4
|
44.2
|
1.0
|
|
C3C
|
E:BCL101
|
4.5
|
44.2
|
1.0
|
|
CMA
|
E:BCL101
|
4.7
|
44.2
|
1.0
|
|
CBD
|
E:BCL101
|
4.8
|
44.2
|
1.0
|
|
Magnesium binding site 7 out
of 24 in 8ydm
Go back to
Magnesium Binding Sites List in 8ydm
Magnesium binding site 7 out
of 24 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg101
b:30.3
occ:1.00
|
MG
|
F:BCL101
|
0.0
|
30.3
|
1.0
|
|
ND
|
F:BCL101
|
1.9
|
30.3
|
1.0
|
|
NB
|
F:BCL101
|
1.9
|
30.3
|
1.0
|
|
NC
|
F:BCL101
|
2.1
|
30.3
|
1.0
|
|
NA
|
F:BCL101
|
2.1
|
30.3
|
1.0
|
|
NE2
|
G:HIS42
|
2.7
|
60.0
|
1.0
|
|
C4D
|
F:BCL101
|
2.8
|
30.3
|
1.0
|
|
C1B
|
F:BCL101
|
2.9
|
30.3
|
1.0
|
|
C4B
|
F:BCL101
|
3.0
|
30.3
|
1.0
|
|
C1C
|
F:BCL101
|
3.0
|
30.3
|
1.0
|
|
C4A
|
F:BCL101
|
3.0
|
30.3
|
1.0
|
|
C1D
|
F:BCL101
|
3.1
|
30.3
|
1.0
|
|
C1A
|
F:BCL101
|
3.1
|
30.3
|
1.0
|
|
C4C
|
F:BCL101
|
3.1
|
30.3
|
1.0
|
|
CE1
|
G:HIS42
|
3.2
|
65.0
|
1.0
|
|
CHB
|
F:BCL101
|
3.3
|
30.3
|
1.0
|
|
CHA
|
F:BCL101
|
3.3
|
30.3
|
1.0
|
|
CHC
|
F:BCL101
|
3.4
|
30.3
|
1.0
|
|
CHD
|
F:BCL101
|
3.5
|
30.3
|
1.0
|
|
CD2
|
G:HIS42
|
3.9
|
63.3
|
1.0
|
|
C3D
|
F:BCL101
|
4.1
|
30.3
|
1.0
|
|
CMB
|
D:BCL101
|
4.1
|
31.6
|
1.0
|
|
C2B
|
F:BCL101
|
4.1
|
30.3
|
1.0
|
|
C3B
|
F:BCL101
|
4.1
|
30.3
|
1.0
|
|
CG2
|
F:ILE25
|
4.2
|
56.3
|
1.0
|
|
C2D
|
F:BCL101
|
4.2
|
30.3
|
1.0
|
|
C2C
|
F:BCL101
|
4.4
|
30.3
|
1.0
|
|
C3A
|
F:BCL101
|
4.4
|
30.3
|
1.0
|
|
C2A
|
F:BCL101
|
4.4
|
30.3
|
1.0
|
|
ND1
|
G:HIS42
|
4.4
|
65.8
|
1.0
|
|
C3C
|
F:BCL101
|
4.4
|
30.3
|
1.0
|
|
CBB
|
D:BCL101
|
4.5
|
31.6
|
1.0
|
|
CAB
|
D:BCL101
|
4.5
|
31.6
|
1.0
|
|
C2B
|
D:BCL101
|
4.6
|
31.6
|
1.0
|
|
C3B
|
D:BCL101
|
4.8
|
31.6
|
1.0
|
|
CBD
|
F:BCL101
|
4.8
|
30.3
|
1.0
|
|
CG
|
G:HIS42
|
4.8
|
65.3
|
1.0
|
|
CD1
|
F:ILE25
|
5.0
|
58.0
|
1.0
|
|
Magnesium binding site 8 out
of 24 in 8ydm
Go back to
Magnesium Binding Sites List in 8ydm
Magnesium binding site 8 out
of 24 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg102
b:30.4
occ:1.00
|
MG
|
G:BCL102
|
0.0
|
30.4
|
1.0
|
|
ND
|
G:BCL102
|
1.9
|
30.4
|
1.0
|
|
NB
|
G:BCL102
|
2.0
|
30.4
|
1.0
|
|
NC
|
G:BCL102
|
2.1
|
30.4
|
1.0
|
|
NA
|
G:BCL102
|
2.1
|
30.4
|
1.0
|
|
C4D
|
G:BCL102
|
2.8
|
30.4
|
1.0
|
|
C1B
|
G:BCL102
|
2.9
|
30.4
|
1.0
|
|
C4B
|
G:BCL102
|
3.0
|
30.4
|
1.0
|
|
C1C
|
G:BCL102
|
3.0
|
30.4
|
1.0
|
|
C4A
|
G:BCL102
|
3.1
|
30.4
|
1.0
|
|
C1D
|
G:BCL102
|
3.1
|
30.4
|
1.0
|
|
C1A
|
G:BCL102
|
3.1
|
30.4
|
1.0
|
|
C4C
|
G:BCL102
|
3.1
|
30.4
|
1.0
|
|
CE1
|
F:HIS26
|
3.2
|
72.8
|
1.0
|
|
CHB
|
G:BCL102
|
3.3
|
30.4
|
1.0
|
|
CHA
|
G:BCL102
|
3.3
|
30.4
|
1.0
|
|
CHC
|
G:BCL102
|
3.4
|
30.4
|
1.0
|
|
CHD
|
G:BCL102
|
3.5
|
30.4
|
1.0
|
|
CBO
|
I:U4Z102
|
3.9
|
35.6
|
1.0
|
|
ND1
|
F:HIS26
|
4.0
|
53.4
|
1.0
|
|
CBB
|
I:BCL103
|
4.0
|
29.9
|
1.0
|
|
C3D
|
G:BCL102
|
4.1
|
30.4
|
1.0
|
|
C2B
|
G:BCL102
|
4.1
|
30.4
|
1.0
|
|
C3B
|
G:BCL102
|
4.2
|
30.4
|
1.0
|
|
NE2
|
F:HIS26
|
4.2
|
78.1
|
1.0
|
|
C2D
|
G:BCL102
|
4.2
|
30.4
|
1.0
|
|
C2C
|
G:BCL102
|
4.3
|
30.4
|
1.0
|
|
C3C
|
G:BCL102
|
4.4
|
30.4
|
1.0
|
|
C3A
|
G:BCL102
|
4.4
|
30.4
|
1.0
|
|
C2A
|
G:BCL102
|
4.4
|
30.4
|
1.0
|
|
CBK
|
I:U4Z102
|
4.4
|
35.6
|
1.0
|
|
CBM
|
I:U4Z102
|
4.5
|
35.6
|
1.0
|
|
CBD
|
G:BCL102
|
4.8
|
30.4
|
1.0
|
|
CMB
|
I:BCL103
|
4.9
|
29.9
|
1.0
|
|
CBN
|
I:U4Z102
|
4.9
|
35.6
|
1.0
|
|
CMD
|
F:BCL101
|
5.0
|
30.3
|
1.0
|
|
Magnesium binding site 9 out
of 24 in 8ydm
Go back to
Magnesium Binding Sites List in 8ydm
Magnesium binding site 9 out
of 24 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg103
b:38.2
occ:1.00
|
MG
|
G:BCL103
|
0.0
|
38.2
|
1.0
|
|
ND
|
G:BCL103
|
1.9
|
38.2
|
1.0
|
|
NB
|
G:BCL103
|
2.0
|
38.2
|
1.0
|
|
NC
|
G:BCL103
|
2.1
|
38.2
|
1.0
|
|
NA
|
G:BCL103
|
2.1
|
38.2
|
1.0
|
|
NE2
|
G:HIS24
|
2.3
|
70.3
|
1.0
|
|
C4D
|
G:BCL103
|
2.8
|
38.2
|
1.0
|
|
C1B
|
G:BCL103
|
2.9
|
38.2
|
1.0
|
|
C4B
|
G:BCL103
|
3.0
|
38.2
|
1.0
|
|
C1C
|
G:BCL103
|
3.0
|
38.2
|
1.0
|
|
C4A
|
G:BCL103
|
3.1
|
38.2
|
1.0
|
|
C1D
|
G:BCL103
|
3.1
|
38.2
|
1.0
|
|
C1A
|
G:BCL103
|
3.1
|
38.2
|
1.0
|
|
C4C
|
G:BCL103
|
3.1
|
38.2
|
1.0
|
|
CD2
|
G:HIS24
|
3.2
|
55.1
|
1.0
|
|
CE1
|
G:HIS24
|
3.3
|
63.2
|
1.0
|
|
CHA
|
G:BCL103
|
3.3
|
38.2
|
1.0
|
|
CHB
|
G:BCL103
|
3.3
|
38.2
|
1.0
|
|
CHC
|
G:BCL103
|
3.4
|
38.2
|
1.0
|
|
CHD
|
G:BCL103
|
3.5
|
38.2
|
1.0
|
|
C3D
|
G:BCL103
|
4.1
|
38.2
|
1.0
|
|
C2B
|
G:BCL103
|
4.1
|
38.2
|
1.0
|
|
C3B
|
G:BCL103
|
4.1
|
38.2
|
1.0
|
|
C2D
|
G:BCL103
|
4.2
|
38.2
|
1.0
|
|
CG
|
G:HIS24
|
4.3
|
55.7
|
1.0
|
|
C3A
|
G:BCL103
|
4.3
|
38.2
|
1.0
|
|
C2C
|
G:BCL103
|
4.3
|
38.2
|
1.0
|
|
ND1
|
G:HIS24
|
4.4
|
60.2
|
1.0
|
|
C2A
|
G:BCL103
|
4.4
|
38.2
|
1.0
|
|
C3C
|
G:BCL103
|
4.5
|
38.2
|
1.0
|
|
CBD
|
G:BCL103
|
4.8
|
38.2
|
1.0
|
|
CMA
|
G:BCL103
|
4.8
|
38.2
|
1.0
|
|
CAC
|
G:BCL103
|
4.9
|
38.2
|
1.0
|
|
Magnesium binding site 10 out
of 24 in 8ydm
Go back to
Magnesium Binding Sites List in 8ydm
Magnesium binding site 10 out
of 24 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg101
b:29.3
occ:1.00
|
MG
|
H:BCL101
|
0.0
|
29.3
|
1.0
|
|
ND
|
H:BCL101
|
1.9
|
29.3
|
1.0
|
|
NB
|
H:BCL101
|
2.0
|
29.3
|
1.0
|
|
NC
|
H:BCL101
|
2.1
|
29.3
|
1.0
|
|
NA
|
H:BCL101
|
2.1
|
29.3
|
1.0
|
|
C4D
|
H:BCL101
|
2.8
|
29.3
|
1.0
|
|
CE1
|
H:HIS26
|
2.9
|
58.3
|
1.0
|
|
C1B
|
H:BCL101
|
2.9
|
29.3
|
1.0
|
|
C4B
|
H:BCL101
|
3.0
|
29.3
|
1.0
|
|
C1C
|
H:BCL101
|
3.0
|
29.3
|
1.0
|
|
C4A
|
H:BCL101
|
3.1
|
29.3
|
1.0
|
|
C1D
|
H:BCL101
|
3.1
|
29.3
|
1.0
|
|
C1A
|
H:BCL101
|
3.1
|
29.3
|
1.0
|
|
C4C
|
H:BCL101
|
3.1
|
29.3
|
1.0
|
|
NE2
|
H:HIS26
|
3.2
|
62.7
|
1.0
|
|
CHB
|
H:BCL101
|
3.3
|
29.3
|
1.0
|
|
CHA
|
H:BCL101
|
3.3
|
29.3
|
1.0
|
|
CHC
|
H:BCL101
|
3.4
|
29.3
|
1.0
|
|
CHD
|
H:BCL101
|
3.5
|
29.3
|
1.0
|
|
CBO
|
K:U4Z101
|
3.8
|
35.6
|
1.0
|
|
CBB
|
J:BCL101
|
3.8
|
27.6
|
1.0
|
|
C3D
|
H:BCL101
|
4.1
|
29.3
|
1.0
|
|
C2B
|
H:BCL101
|
4.1
|
29.3
|
1.0
|
|
C3B
|
H:BCL101
|
4.2
|
29.3
|
1.0
|
|
ND1
|
H:HIS26
|
4.2
|
57.5
|
1.0
|
|
C2D
|
H:BCL101
|
4.2
|
29.3
|
1.0
|
|
C2C
|
H:BCL101
|
4.3
|
29.3
|
1.0
|
|
C3C
|
H:BCL101
|
4.4
|
29.3
|
1.0
|
|
CMB
|
J:BCL101
|
4.4
|
27.6
|
1.0
|
|
C3A
|
H:BCL101
|
4.4
|
29.3
|
1.0
|
|
C2A
|
H:BCL101
|
4.4
|
29.3
|
1.0
|
|
CD2
|
H:HIS26
|
4.5
|
62.4
|
1.0
|
|
C2B
|
J:BCL101
|
4.7
|
27.6
|
1.0
|
|
CBM
|
K:U4Z101
|
4.8
|
35.6
|
1.0
|
|
CAB
|
J:BCL101
|
4.8
|
27.6
|
1.0
|
|
CBD
|
H:BCL101
|
4.8
|
29.3
|
1.0
|
|
C3B
|
J:BCL101
|
4.9
|
27.6
|
1.0
|
|
CMD
|
I:BCL103
|
4.9
|
29.9
|
1.0
|
|
CBL
|
K:U4Z101
|
4.9
|
35.6
|
1.0
|
|
Reference:
G.Huang,
S.Dong,
L.Ma,
L.Li,
J.Ju,
M.J.Wang,
J.P.Zhang,
S.F.Sui,
X.Qin.
Cryo-Em Structure of A Minimal Reaction Center-Light-Harvesting Complex From the Phototrophic Bacterium Chloroflexus Aurantiacus. J Integr Plant Biol 2025.
ISSN: ESSN 1744-7909
PubMed: 39912559
DOI: 10.1111/JIPB.13853
Page generated: Tue Feb 25 11:01:07 2025
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