Magnesium in PDB 8yec: Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose

The structure of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose, PDB code: 8yec was solved by M.Watanabe, Y.Nakamichi, S.Mine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	130.425, 135.131, 151.131, 90, 90.06, 90
R / Rfree (%)	20.7 / 25.5

The structure of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose also contains other interesting chemical elements:

Sodium

(Na)

8 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose (pdb code 8yec). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose, PDB code: 8yec:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg303 b:25.3 occ:1.00 O2 E:PSJ301 2.1 56.0 0.6 OE1 E:GLU240 2.1 61.0 1.0 O2 E:FUD302 2.2 59.3 0.4 OE2 E:GLU146 2.2 45.6 1.0 OD2 E:ASP179 2.2 41.0 1.0 ND1 E:HIS205 2.3 40.9 1.0 O3 E:PSJ301 2.4 57.5 0.6 O3 E:FUD302 2.5 61.8 0.4 C2 E:FUD302 2.8 60.5 0.4 C3 E:FUD302 2.9 65.7 0.4 C2 E:PSJ301 2.9 56.0 0.6 CE1 E:HIS205 3.1 43.1 1.0 C3 E:PSJ301 3.1 60.4 0.6 CD E:GLU240 3.1 59.3 1.0 CD E:GLU146 3.2 48.1 1.0 CG E:ASP179 3.4 39.8 1.0 CG E:HIS205 3.4 40.1 1.0 OE2 E:GLU240 3.5 72.3 1.0 OE1 E:GLU146 3.6 51.5 1.0 CB E:HIS205 3.8 36.6 1.0 CB E:ASP179 4.0 35.3 1.0 NH1 E:ARG211 4.2 41.4 1.0 C1 E:FUD302 4.2 57.0 0.4 NE2 E:HIS205 4.3 42.0 1.0 C1 E:PSJ301 4.3 52.5 0.6 OD1 E:ASP179 4.4 41.1 1.0 C4 E:FUD302 4.4 73.8 0.4 NE2 E:HIS182 4.4 33.1 1.0 CD2 E:HIS205 4.5 41.6 1.0 CD2 E:HIS182 4.5 32.1 1.0 CG E:GLU240 4.5 48.0 1.0 C4 E:PSJ301 4.5 67.3 0.6 CG E:GLU146 4.6 45.0 1.0 NE2 E:HIS177 4.6 56.1 1.0 CE1 E:HIS177 4.7 50.6 1.0 O1 E:FUD302 4.7 54.9 0.4 O1 E:PSJ301 4.7 50.2 0.6 O5 E:PSJ301 4.8 68.3 0.6 C5 E:PSJ301 4.8 72.2 0.6 O4 E:FUD302 4.9 76.6 0.4

Magnesium binding site 2 out of 16 in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg303 b:28.6 occ:1.00 OE2 F:GLU146 2.0 58.3 1.0 O2 F:PSJ301 2.0 45.0 0.7 CD2 F:HIS205 2.1 46.2 1.0 O3 F:FUD302 2.1 60.0 0.3 OD2 F:ASP179 2.2 49.1 1.0 O3 F:PSJ301 2.2 62.0 0.7 O2 F:FUD302 2.3 51.7 0.3 OE1 F:GLU240 2.3 59.9 1.0 C2 F:PSJ301 2.7 53.4 0.7 C3 F:PSJ301 2.8 60.2 0.7 C3 F:FUD302 2.9 60.0 0.3 C2 F:FUD302 2.9 55.4 0.3 NE2 F:HIS205 3.0 46.7 1.0 CD F:GLU146 3.1 54.5 1.0 CG F:HIS205 3.1 48.1 1.0 CD F:GLU240 3.2 56.6 1.0 CG F:ASP179 3.3 43.5 1.0 OE2 F:GLU240 3.3 57.5 1.0 OE1 F:GLU146 3.5 56.7 1.0 CB F:HIS205 3.7 43.6 1.0 CB F:ASP179 3.8 44.4 1.0 CE1 F:HIS205 4.2 48.4 1.0 C1 F:PSJ301 4.2 49.4 0.7 ND1 F:HIS205 4.2 48.6 1.0 OD1 F:ASP179 4.2 45.1 1.0 C4 F:PSJ301 4.3 64.5 0.7 C4 F:FUD302 4.3 63.4 0.3 NH1 F:ARG211 4.3 36.7 1.0 CE1 F:HIS177 4.3 51.1 1.0 C1 F:FUD302 4.4 52.4 0.3 NE2 F:HIS177 4.4 54.5 1.0 CG F:GLU146 4.4 51.4 1.0 O4 F:FUD302 4.5 65.0 0.3 CD2 F:HIS182 4.6 35.8 1.0 CG F:GLU240 4.6 49.5 1.0 NE2 F:HIS182 4.6 35.1 1.0 O1 F:PSJ301 4.7 46.7 0.7 C5 F:PSJ301 4.8 65.3 0.7 O1 F:FUD302 4.8 50.1 0.3 O5 F:PSJ301 4.9 63.3 0.7 O5 F:FUD302 5.0 68.9 0.3

Magnesium binding site 3 out of 16 in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:17.7 occ:1.00 O2 A:PSJ301 2.1 44.0 0.7 OE2 A:GLU146 2.1 40.5 1.0 ND1 A:HIS205 2.2 37.3 1.0 O2 A:FUD302 2.2 43.5 0.3 O3 A:FUD302 2.2 46.1 0.3 OE1 A:GLU240 2.2 42.9 1.0 OD2 A:ASP179 2.3 31.7 1.0 O3 A:PSJ301 2.6 50.5 0.7 C2 A:FUD302 2.9 45.4 0.3 C3 A:FUD302 2.9 48.8 0.3 C2 A:PSJ301 3.0 47.6 0.7 CE1 A:HIS205 3.0 38.4 1.0 C3 A:PSJ301 3.2 54.3 0.7 CD A:GLU240 3.2 44.1 1.0 CD A:GLU146 3.2 41.6 1.0 CG A:ASP179 3.3 32.5 1.0 CG A:HIS205 3.3 34.2 1.0 OE2 A:GLU240 3.5 49.2 1.0 OE1 A:GLU146 3.7 45.3 1.0 CB A:HIS205 3.7 31.8 1.0 CB A:ASP179 3.8 31.1 1.0 NH1 A:ARG211 3.9 38.2 1.0 NE2 A:HIS205 4.2 35.8 1.0 OD1 A:ASP179 4.3 34.9 1.0 C4 A:FUD302 4.3 53.3 0.3 C1 A:PSJ301 4.4 43.7 0.7 CD2 A:HIS205 4.4 36.6 1.0 C1 A:FUD302 4.4 43.6 0.3 NE2 A:HIS182 4.4 27.4 1.0 CD2 A:HIS182 4.4 25.7 1.0 NE2 A:HIS177 4.5 34.9 1.0 CG A:GLU146 4.5 40.1 1.0 CE1 A:HIS177 4.6 33.3 1.0 CG A:GLU240 4.6 39.6 1.0 O4 A:FUD302 4.6 55.1 0.3 C4 A:PSJ301 4.6 61.2 0.7 O1 A:PSJ301 4.7 43.0 0.7 O1 A:FUD302 4.8 43.3 0.3 O5 A:PSJ301 4.8 61.6 0.7 NH2 A:ARG211 4.9 42.1 1.0 CZ A:ARG211 4.9 38.2 1.0

Magnesium binding site 4 out of 16 in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg303 b:21.7 occ:1.00 O2 B:FUD302 2.0 53.6 0.3 O2 B:PSJ301 2.1 54.1 0.7 OE2 B:GLU146 2.1 49.0 1.0 OD2 B:ASP179 2.2 45.4 1.0 O3 B:FUD302 2.2 58.6 0.3 O3 B:PSJ301 2.3 57.6 0.7 ND1 B:HIS205 2.3 38.5 1.0 OE1 B:GLU240 2.4 49.6 1.0 C2 B:PSJ301 2.8 53.9 0.7 C2 B:FUD302 2.8 54.7 0.3 C3 B:PSJ301 2.9 58.1 0.7 C3 B:FUD302 3.0 58.5 0.3 CE1 B:HIS205 3.1 37.7 1.0 CD B:GLU240 3.1 47.1 1.0 CD B:GLU146 3.2 51.7 1.0 OE2 B:GLU240 3.2 53.2 1.0 CG B:ASP179 3.3 38.4 1.0 CG B:HIS205 3.5 38.2 1.0 OE1 B:GLU146 3.6 53.4 1.0 CB B:ASP179 3.8 38.1 1.0 CB B:HIS205 3.9 36.8 1.0 NH1 B:ARG211 4.1 31.4 1.0 O4 B:FUD302 4.2 61.7 0.3 C1 B:PSJ301 4.2 49.5 0.7 C4 B:FUD302 4.2 61.4 0.3 NE2 B:HIS205 4.3 36.3 1.0 C1 B:FUD302 4.3 51.9 0.3 OD1 B:ASP179 4.3 40.6 1.0 C4 B:PSJ301 4.3 62.4 0.7 CD2 B:HIS205 4.5 37.0 1.0 NE2 B:HIS182 4.5 28.7 1.0 CD2 B:HIS182 4.5 27.9 1.0 CG B:GLU146 4.5 46.5 1.0 O1 B:PSJ301 4.6 45.1 0.7 CG B:GLU240 4.6 38.9 1.0 CE1 B:HIS177 4.6 39.8 1.0 O1 B:FUD302 4.6 49.4 0.3 NE2 B:HIS177 4.7 41.9 1.0 C5 B:PSJ301 4.8 65.0 0.7 O5 B:PSJ301 4.8 62.4 0.7

Magnesium binding site 5 out of 16 in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg303 b:18.6 occ:1.00 O2 C:PSJ301 2.1 57.9 0.7 OD2 C:ASP179 2.1 34.4 1.0 OE2 C:GLU146 2.1 37.6 1.0 OE1 C:GLU240 2.3 47.8 1.0 O3 C:FUD302 2.3 52.9 0.3 O2 C:FUD302 2.3 53.3 0.3 ND1 C:HIS205 2.3 41.7 1.0 O3 C:PSJ301 2.6 51.9 0.7 C2 C:FUD302 2.9 54.9 0.3 C2 C:PSJ301 2.9 59.1 0.7 C3 C:FUD302 3.0 56.6 0.3 CE1 C:HIS205 3.2 45.7 1.0 CG C:ASP179 3.2 34.5 1.0 C3 C:PSJ301 3.2 58.1 0.7 CD C:GLU146 3.2 39.0 1.0 CD C:GLU240 3.2 45.6 1.0 CG C:HIS205 3.5 39.5 1.0 OE2 C:GLU240 3.5 46.0 1.0 OE1 C:GLU146 3.7 42.3 1.0 CB C:ASP179 3.8 32.6 1.0 CB C:HIS205 3.9 35.9 1.0 O C:HOH402 4.0 31.4 1.0 NH1 C:ARG211 4.1 38.0 1.0 OD1 C:ASP179 4.1 33.7 1.0 C1 C:FUD302 4.3 54.1 0.3 C1 C:PSJ301 4.3 58.6 0.7 NE2 C:HIS205 4.4 42.6 1.0 C4 C:FUD302 4.4 59.5 0.3 NE2 C:HIS182 4.5 32.8 1.0 CD2 C:HIS182 4.5 30.2 1.0 CG C:GLU146 4.5 37.0 1.0 CD2 C:HIS205 4.5 41.6 1.0 O1 C:PSJ301 4.6 56.7 0.7 CG C:GLU240 4.6 42.3 1.0 NE2 C:HIS177 4.6 37.0 1.0 C4 C:PSJ301 4.6 63.8 0.7 O4 C:FUD302 4.6 59.1 0.3 CE1 C:HIS177 4.7 38.6 1.0 O1 C:FUD302 4.9 53.1 0.3

Magnesium binding site 6 out of 16 in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg303 b:17.0 occ:1.00 O3 D:FUD302 1.9 47.0 0.2 O2 D:PSJ301 2.0 46.5 0.8 OE1 D:GLU240 2.2 44.2 1.0 OD2 D:ASP179 2.2 34.5 1.0 O3 D:PSJ301 2.3 51.3 0.8 OE2 D:GLU146 2.3 35.2 1.0 ND1 D:HIS205 2.3 41.8 1.0 O2 D:FUD302 2.4 46.5 0.2 C2 D:PSJ301 2.8 51.0 0.8 C3 D:FUD302 2.8 48.5 0.2 C3 D:PSJ301 2.8 52.5 0.8 C2 D:FUD302 2.9 47.7 0.2 CE1 D:HIS205 3.1 42.3 1.0 CD D:GLU240 3.1 43.7 1.0 CG D:ASP179 3.3 38.0 1.0 CD D:GLU146 3.4 37.3 1.0 OE2 D:GLU240 3.4 50.3 1.0 CG D:HIS205 3.5 39.4 1.0 CB D:ASP179 3.8 35.5 1.0 OE1 D:GLU146 3.8 38.8 1.0 O D:HOH406 3.9 36.8 1.0 CB D:HIS205 3.9 35.6 1.0 NH1 D:ARG211 4.1 33.0 1.0 C4 D:FUD302 4.1 49.4 0.2 C1 D:PSJ301 4.2 49.4 0.8 C4 D:PSJ301 4.3 56.2 0.8 NE2 D:HIS205 4.3 40.7 1.0 O4 D:FUD302 4.3 49.6 0.2 NE2 D:HIS182 4.3 28.1 1.0 OD1 D:ASP179 4.4 36.6 1.0 C1 D:FUD302 4.4 47.3 0.2 CD2 D:HIS182 4.4 27.7 1.0 CD2 D:HIS205 4.5 39.9 1.0 CG D:GLU240 4.5 37.7 1.0 NE2 D:HIS177 4.6 38.7 1.0 CG D:GLU146 4.7 38.5 1.0 CE1 D:HIS177 4.7 40.5 1.0 O1 D:PSJ301 4.7 44.9 0.8 O5 D:PSJ301 4.7 53.1 0.8 C5 D:PSJ301 4.7 57.0 0.8 O1 D:FUD302 4.9 45.8 0.2

Magnesium binding site 7 out of 16 in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg303 b:21.6 occ:1.00 O2 G:FUD302 1.8 55.0 0.6 O2 G:PSJ301 2.0 49.8 0.4 OE1 G:GLU240 2.1 57.4 1.0 OD2 G:ASP179 2.1 32.5 1.0 ND1 G:HIS205 2.2 45.4 1.0 OE2 G:GLU146 2.3 38.4 1.0 C2 G:FUD302 2.7 63.1 0.6 O3 G:PSJ301 2.7 56.7 0.4 O3 G:FUD302 2.9 62.4 0.6 C2 G:PSJ301 2.9 55.5 0.4 CE1 G:HIS205 3.0 47.5 1.0 C3 G:FUD302 3.1 69.1 0.6 CD G:GLU240 3.1 51.6 1.0 CG G:ASP179 3.2 37.6 1.0 CG G:HIS205 3.3 42.5 1.0 C3 G:PSJ301 3.3 59.0 0.4 CD G:GLU146 3.4 40.6 1.0 OE2 G:GLU240 3.4 53.6 1.0 CB G:HIS205 3.7 37.3 1.0 CB G:ASP179 3.9 37.3 1.0 OE1 G:GLU146 3.9 44.1 1.0 C1 G:FUD302 4.1 60.0 0.6 O G:HOH416 4.1 33.8 1.0 OD1 G:ASP179 4.1 39.0 1.0 NE2 G:HIS205 4.2 45.8 1.0 NH1 G:ARG211 4.2 47.1 1.0 C1 G:PSJ301 4.3 53.8 0.4 CD2 G:HIS205 4.3 45.3 1.0 O1 G:FUD302 4.4 61.0 0.6 CG G:GLU240 4.4 46.8 1.0 O1 G:PSJ301 4.5 54.5 0.4 NE2 G:HIS177 4.5 42.9 1.0 CD2 G:HIS182 4.5 29.9 1.0 C4 G:FUD302 4.6 76.3 0.6 NE2 G:HIS182 4.6 31.9 1.0 CG G:GLU146 4.6 39.4 1.0 CE1 G:HIS177 4.6 42.4 1.0 C4 G:PSJ301 4.7 62.4 0.4

Magnesium binding site 8 out of 16 in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg303 b:20.9 occ:1.00 OE1 H:GLU240 2.0 45.0 1.0 O2 H:PSJ301 2.1 45.0 0.6 OE2 H:GLU146 2.2 44.4 1.0 O2 H:FUD302 2.2 47.0 0.4 ND1 H:HIS205 2.2 41.6 1.0 OD2 H:ASP179 2.2 37.9 1.0 O3 H:PSJ301 2.4 54.3 0.6 O3 H:FUD302 2.4 55.3 0.4 C2 H:PSJ301 2.8 51.3 0.6 C2 H:FUD302 2.9 52.5 0.4 C3 H:PSJ301 2.9 55.8 0.6 C3 H:FUD302 2.9 57.5 0.4 CE1 H:HIS205 3.0 42.3 1.0 CD H:GLU240 3.0 45.5 1.0 CG H:ASP179 3.3 39.8 1.0 OE2 H:GLU240 3.3 46.9 1.0 CD H:GLU146 3.3 43.1 1.0 CG H:HIS205 3.4 39.6 1.0 CB H:ASP179 3.8 37.4 1.0 OE1 H:GLU146 3.8 46.1 1.0 CB H:HIS205 3.9 37.4 1.0 NH1 H:ARG211 4.1 41.2 1.0 NE2 H:HIS205 4.2 42.0 1.0 C1 H:PSJ301 4.3 49.4 0.6 O H:HOH425 4.3 43.1 1.0 C1 H:FUD302 4.3 50.6 0.4 OD1 H:ASP179 4.4 40.3 1.0 C4 H:PSJ301 4.4 61.4 0.6 CD2 H:HIS205 4.4 41.5 1.0 CG H:GLU240 4.4 41.5 1.0 C4 H:FUD302 4.4 63.1 0.4 CD2 H:HIS182 4.5 31.9 1.0 NE2 H:HIS182 4.5 32.1 1.0 CG H:GLU146 4.6 41.4 1.0 O1 H:PSJ301 4.7 47.9 0.6 CE1 H:HIS177 4.7 43.8 1.0 NE2 H:HIS177 4.7 44.4 1.0 O5 H:PSJ301 4.8 58.2 0.6 O1 H:FUD302 4.8 49.3 0.4 C5 H:PSJ301 4.9 61.4 0.6 O4 H:FUD302 4.9 67.3 0.4 CB H:GLU240 5.0 37.4 1.0

Magnesium binding site 9 out of 16 in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg303 b:27.2 occ:1.00 OD2 I:ASP179 2.1 44.2 1.0 ND1 I:HIS205 2.1 41.6 1.0 OE2 I:GLU146 2.2 45.2 1.0 O3 I:FUD302 2.2 53.8 0.1 O3 I:PSJ301 2.3 55.2 0.9 OE1 I:GLU240 2.3 64.2 1.0 O2 I:PSJ301 2.4 52.1 0.9 O2 I:FUD302 2.4 51.3 0.1 CE1 I:HIS205 3.0 46.0 1.0 C3 I:PSJ301 3.0 57.9 0.9 C2 I:PSJ301 3.0 52.5 0.9 C2 I:FUD302 3.2 52.2 0.1 CD I:GLU240 3.2 60.4 1.0 C3 I:FUD302 3.2 54.3 0.1 CD I:GLU146 3.3 48.8 1.0 CG I:HIS205 3.3 41.0 1.0 CG I:ASP179 3.3 43.4 1.0 OE2 I:GLU240 3.5 67.2 1.0 OE1 I:GLU146 3.7 52.3 1.0 CB I:HIS205 3.7 37.0 1.0 CB I:ASP179 3.9 38.2 1.0 O4 I:FUD302 4.1 56.7 0.1 NE2 I:HIS205 4.1 46.6 1.0 NH1 I:ARG211 4.3 39.0 1.0 C4 I:FUD302 4.3 56.4 0.1 OD1 I:ASP179 4.3 41.1 1.0 CD2 I:HIS205 4.3 43.1 1.0 C4 I:PSJ301 4.4 66.8 0.9 NE2 I:HIS177 4.5 50.4 1.0 C1 I:PSJ301 4.5 48.0 0.9 CG I:GLU146 4.6 46.4 1.0 CG I:GLU240 4.6 48.6 1.0 CE1 I:HIS177 4.6 46.6 1.0 NE2 I:HIS182 4.6 34.8 1.0 CD2 I:HIS182 4.6 34.9 1.0 C1 I:FUD302 4.6 51.1 0.1 O5 I:PSJ301 4.8 69.4 0.9 C5 I:PSJ301 4.8 73.0 0.9 O1 I:PSJ301 4.9 46.8 0.9 O1 I:FUD302 5.0 50.4 0.1

Magnesium binding site 10 out of 16 in the Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg304 b:27.3 occ:1.00 O2 J:PSJ302 2.0 47.3 0.6 O3 J:FUD303 2.0 60.7 0.4 CD2 J:HIS205 2.1 43.3 1.0 OE2 J:GLU146 2.1 51.4 1.0 OE1 J:GLU240 2.2 56.0 1.0 O2 J:FUD303 2.3 49.6 0.4 OD2 J:ASP179 2.3 48.4 1.0 O3 J:PSJ302 2.4 66.7 0.6 C3 J:FUD303 2.7 58.2 0.4 C2 J:PSJ302 2.8 55.0 0.6 C2 J:FUD303 2.8 53.6 0.4 C3 J:PSJ302 3.0 61.6 0.6 NE2 J:HIS205 3.0 44.5 1.0 CG J:HIS205 3.1 46.4 1.0 CD J:GLU240 3.2 53.9 1.0 CD J:GLU146 3.2 50.8 1.0 CG J:ASP179 3.3 43.9 1.0 OE2 J:GLU240 3.5 58.7 1.0 OE1 J:GLU146 3.7 51.7 1.0 CB J:HIS205 3.7 41.7 1.0 CB J:ASP179 3.8 44.2 1.0 NH1 J:ARG211 4.1 40.2 1.0 C4 J:FUD303 4.1 60.0 0.4 CE1 J:HIS205 4.1 43.6 1.0 ND1 J:HIS205 4.2 44.3 1.0 C1 J:PSJ302 4.2 52.3 0.6 C1 J:FUD303 4.3 51.2 0.4 OD1 J:ASP179 4.3 44.5 1.0 C4 J:PSJ302 4.4 65.9 0.6 NE2 J:HIS177 4.4 56.3 1.0 CE1 J:HIS177 4.4 53.5 1.0 O4 J:FUD303 4.5 62.8 0.4 CG J:GLU146 4.5 48.3 1.0 CD2 J:HIS182 4.5 36.5 1.0 NE2 J:HIS182 4.5 35.7 1.0 CG J:GLU240 4.6 46.7 1.0 O1 J:PSJ302 4.6 49.1 0.6 O5 J:PSJ302 4.6 74.1 0.6 C5 J:PSJ302 4.8 66.7 0.6 O1 J:FUD303 4.9 49.1 0.4 C5 J:FUD303 4.9 62.2 0.4

M.Watanabe, Y.Nakamichi, S.Mine. Crystal Structure of L-Ribulose 3-Epimerase in Complex with D-Allulose To Be Published.