Magnesium in PDB 8z96: Crystal Structure of Crtago/Tir-Apaz in Complex with Guide Dna and 21- Nt Target Dna

The structure of Crystal Structure of Crtago/Tir-Apaz in Complex with Guide Dna and 21- Nt Target Dna, PDB code: 8z96 was solved by R.Hu, J.Chen, L.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.68 / 3.36
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	133.574, 133.574, 167.258, 90, 90, 120
R / Rfree (%)	24.7 / 28.7

The binding sites of Magnesium atom in the Crystal Structure of Crtago/Tir-Apaz in Complex with Guide Dna and 21- Nt Target Dna (pdb code 8z96). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Crtago/Tir-Apaz in Complex with Guide Dna and 21- Nt Target Dna, PDB code: 8z96:

Magnesium binding site 1 out of 1 in the Crystal Structure of Crtago/Tir-Apaz in Complex with Guide Dna and 21- Nt Target Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Crtago/Tir-Apaz in Complex with Guide Dna and 21- Nt Target Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg101 b:43.3 occ:1.00 O3' D:DT21 3.0 37.4 1.0 C3' D:DT21 3.7 43.6 1.0 OD1 A:ASN468 4.0 30.1 1.0 O3' D:DC19 4.0 73.6 1.0 NZ A:LYS485 4.0 70.1 1.0 CB A:ASN468 4.4 25.1 1.0 C2' D:DT21 4.4 41.3 1.0 CG A:ASN468 4.5 27.9 1.0 CG2 A:ILE507 4.5 48.1 1.0 C3' D:DC19 4.6 71.5 1.0 OXT A:ILE507 4.7 42.6 1.0 O A:ASN468 4.9 27.3 1.0

R.Hu, C.Guo, X.Liu, Y.Lin, Z.Yang, Z.Li, Y.Yang, E.Ma, Y.Li, J.Chen, L.Liu. Structural Basis of Ssdna-Guided Nadase Activation of Prokaryotic Sparta System. Nucleic Acids Res. V. 53 2025.
ISSN: ESSN 1362-4962
PubMed: 39997222
DOI: 10.1093/NAR/GKAF110