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Magnesium in PDB 8za1: Lbadh Mutant E144R with Nadp

Protein crystallography data

The structure of Lbadh Mutant E144R with Nadp, PDB code: 8za1 was solved by W.H.Xu, Y.X.Cen, Q.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.86 / 1.60
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 55.71, 82.51, 113.09, 90, 90, 90
R / Rfree (%) 14.9 / 16.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Lbadh Mutant E144R with Nadp (pdb code 8za1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lbadh Mutant E144R with Nadp, PDB code: 8za1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8za1

Go back to Magnesium Binding Sites List in 8za1
Magnesium binding site 1 out of 2 in the Lbadh Mutant E144R with Nadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lbadh Mutant E144R with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg310

b:17.6
occ:0.50
O A:HOH509 2.0 21.2 0.5
O A:HOH478 2.1 20.3 1.0
O A:GLN251 2.1 20.3 1.0
O A:HOH526 2.1 21.6 0.5
C A:GLN251 3.1 19.6 1.0
OXT A:GLN251 3.3 20.4 1.0
O A:TYR248 4.4 19.9 1.0
O A:HOH540 4.4 30.4 1.0
CA A:GLN251 4.4 18.0 1.0
CG1 A:VAL147 4.6 20.1 1.0
O A:THR249 4.7 21.9 1.0
N A:GLN251 4.7 18.7 1.0
O A:HOH437 4.9 21.2 1.0
CA A:THR249 5.0 18.6 1.0
CG A:GLN251 5.0 18.4 1.0
C A:THR249 5.0 20.4 1.0

Magnesium binding site 2 out of 2 in 8za1

Go back to Magnesium Binding Sites List in 8za1
Magnesium binding site 2 out of 2 in the Lbadh Mutant E144R with Nadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lbadh Mutant E144R with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg311

b:33.7
occ:1.00
O2N A:NAP301 2.0 41.2 0.8
O1X A:NAP301 2.0 27.0 0.8
O A:HOH511 2.1 34.8 1.0
O A:HOH423 2.1 38.1 1.0
O A:HOH522 2.1 36.8 1.0
O2A A:NAP301 2.3 41.3 0.8
PN A:NAP301 3.3 53.9 0.8
P2B A:NAP301 3.4 27.1 0.8
PA A:NAP301 3.5 43.6 0.8
O3 A:NAP301 3.7 47.7 0.8
NH2 A:ARG38 3.9 38.4 1.0
O2X A:NAP301 3.9 29.6 0.8
O2B A:NAP301 4.0 23.4 0.8
C2B A:NAP301 4.0 27.9 0.8
C5D A:NAP301 4.2 71.9 0.8
O5D A:NAP301 4.2 61.6 0.8
ND1 A:HIS39 4.3 35.8 1.0
O5B A:NAP301 4.4 33.5 0.8
O1N A:NAP301 4.4 55.6 0.8
CD1 A:LEU16 4.5 42.5 1.0
CE1 A:HIS39 4.5 36.9 1.0
O3X A:NAP301 4.5 27.3 0.8
O1A A:NAP301 4.7 48.9 0.8
C3B A:NAP301 4.8 27.7 0.8

Reference:

W.H.Xu, Y.X.Cen, Q.Wu. Lbadh Mutant E144R with Nadp To Be Published.
Page generated: Fri Aug 15 22:11:29 2025

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