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Magnesium in PDB 8zwq: Pseudorabies Virus Dutpase Structure

Protein crystallography data

The structure of Pseudorabies Virus Dutpase Structure, PDB code: 8zwq was solved by Y.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.45 / 2.23
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 98.249, 103.264, 98.733, 90, 99.47, 90
R / Rfree (%) 27.7 / 33.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Pseudorabies Virus Dutpase Structure (pdb code 8zwq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Pseudorabies Virus Dutpase Structure, PDB code: 8zwq:

Magnesium binding site 1 out of 1 in 8zwq

Go back to Magnesium Binding Sites List in 8zwq
Magnesium binding site 1 out of 1 in the Pseudorabies Virus Dutpase Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pseudorabies Virus Dutpase Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:53.9
occ:1.00
N A:SER173 3.1 17.4 1.0
O3' A:UMP402 3.3 93.7 1.0
CB A:SER173 3.3 41.8 1.0
OG A:SER173 3.3 56.2 1.0
O5' A:UMP402 3.7 108.8 1.0
CA A:SER173 3.8 32.7 1.0
C4' A:UMP402 3.8 98.7 1.0
C6 A:UMP402 4.1 78.9 1.0
NE2 A:GLN214 4.1 21.0 1.0
C3' A:UMP402 4.1 97.0 1.0
C A:ARG172 4.1 27.6 1.0
C5' A:UMP402 4.2 107.1 1.0
CA A:ARG172 4.2 33.5 1.0
C1' A:UMP402 4.4 93.2 1.0
C2' A:UMP402 4.5 95.0 1.0
N1 A:UMP402 4.6 86.4 1.0
P A:UMP402 4.7 112.6 1.0
CB A:ARG172 4.7 34.5 1.0
O A:ILE83 4.7 32.0 1.0
OP2 A:UMP402 4.7 119.2 1.0
OP3 A:UMP402 4.9 95.1 1.0
C A:SER173 4.9 18.2 1.0
C5 A:UMP402 5.0 82.4 1.0
CG A:ARG172 5.0 41.5 1.0
N A:SER174 5.0 14.1 1.0
CD A:GLN214 5.0 30.2 1.0

Reference:

Y.Wang, Y.Wang. N/A N/A.
Page generated: Fri Aug 15 22:54:57 2025

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