Magnesium in PDB 8zyc: Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex A

All present enzymatic activity of Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex A:
2.5.1.47;

The binding sites of Magnesium atom in the Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex A (pdb code 8zyc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex A, PDB code: 8zyc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex A within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:63.3 occ:1.00 OD1 B:ASP155 2.2 55.6 1.0 OD2 B:ASP155 2.5 55.6 1.0 CG B:ASP155 2.6 55.6 1.0 CB B:ASP155 4.1 55.6 1.0 O B:ASN149 4.1 56.9 1.0 CD2 B:HIS154 4.3 56.6 1.0 CD B:LYS152 4.4 54.6 1.0 N B:ASP155 4.5 55.6 1.0 CB B:LYS152 4.7 54.6 1.0 CA B:ASP155 4.7 55.6 1.0 OE2 B:GLU181 4.7 60.9 1.0 CG B:LYS152 4.8 54.6 1.0 CB B:HIS154 4.9 56.6 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex A within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:82.3 occ:1.00 OP2 C:U8 2.8 95.9 1.0 OP2 C:U12 2.8 80.6 1.0 OP1 C:U8 3.4 95.9 1.0 P C:U8 3.5 95.9 1.0 OP2 C:A9 4.2 86.0 1.0 P C:U12 4.3 80.6 1.0 O5' C:U8 4.4 95.9 1.0 O3' C:G7 4.9 123.3 1.0 O5' C:U12 4.9 80.6 1.0

Z.Feng, Y.Yashiro, K.Tomita. Mechanism of Activation of Contact-Dependent Growth Inhibition Trnase Toxin By the Amino Acid Biogenesis Factor Cysk in the Bacterial Competition System. To Be Published.