Magnesium in PDB 8zyd: Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex B

All present enzymatic activity of Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex B:
2.5.1.47;

The binding sites of Magnesium atom in the Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex B (pdb code 8zyd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex B, PDB code: 8zyd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex B within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:62.4 occ:1.00 OD1 B:ASP155 2.2 53.5 1.0 OD2 B:ASP155 2.4 53.5 1.0 CG B:ASP155 2.6 53.5 1.0 CB B:ASP155 4.1 53.5 1.0 O B:ASN149 4.3 53.7 1.0 CZ2 B:TRP176 4.3 69.3 1.0 CH2 B:TRP176 4.5 69.3 1.0 CD B:LYS152 4.5 51.8 1.0 CA B:ASP155 4.8 53.5 1.0 N B:ASP155 4.8 53.5 1.0 CB B:LYS152 4.8 51.8 1.0 O B:ALA150 4.9 51.3 1.0 CG B:LYS152 5.0 51.8 1.0 O2' C:C31 5.0 105.1 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Uropathogenic Escherichia Coli Cysk:Cdia:Trna Complex B within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:86.9 occ:1.00 OP2 C:A9 3.2 92.3 1.0 OP1 C:A9 3.6 92.3 1.0 OP2 C:U12 3.6 87.2 1.0 OP2 C:U8 3.6 98.7 1.0 OP1 C:U8 3.7 98.7 1.0 P C:A9 3.9 92.3 1.0 P C:U8 4.0 98.7 1.0 OP2 C:C11 4.1 87.6 1.0 O5' C:U8 4.4 98.7 1.0 O5' C:A9 5.0 92.3 1.0 P C:C11 5.0 87.6 1.0

Z.Feng, Y.Yashiro, K.Tomita. Mechanism of Activation of Contact-Dependent Growth Inhibition Trnase Toxin By the Amino Acid Biogenesis Factor Cysk in the Bacterial Competition System. To Be Published.