Magnesium in PDB 9avj: PS3 F1 Atpase Wild Type

All present enzymatic activity of PS3 F1 Atpase Wild Type:
7.1.2.2;

The binding sites of Magnesium atom in the PS3 F1 Atpase Wild Type (pdb code 9avj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the PS3 F1 Atpase Wild Type, PDB code: 9avj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the PS3 F1 Atpase Wild Type


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of PS3 F1 Atpase Wild Type within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:72.3 occ:1.00 N3B A:ANP600 2.1 54.4 1.0 PG A:ANP600 2.4 54.4 1.0 O1G A:ANP600 2.4 54.4 1.0 OG1 A:THR176 2.6 35.4 1.0 O3A A:ANP600 2.6 54.4 1.0 O2G A:ANP600 2.6 54.4 1.0 PB A:ANP600 2.9 54.4 1.0 CB A:THR176 3.0 35.4 1.0 O2A A:ANP600 3.1 54.4 1.0 PA A:ANP600 3.4 54.4 1.0 CG2 A:THR176 3.8 35.4 1.0 O5' A:ANP600 3.9 54.4 1.0 O3G A:ANP600 3.9 54.4 1.0 O2B A:ANP600 3.9 54.4 1.0 O1B A:ANP600 4.0 54.4 1.0 N A:THR176 4.2 35.4 1.0 CA A:THR176 4.2 35.4 1.0 C5' A:ANP600 4.6 54.4 1.0 O1A A:ANP600 4.7 54.4 1.0

Magnesium binding site 2 out of 5 in the PS3 F1 Atpase Wild Type


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of PS3 F1 Atpase Wild Type within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:50.7 occ:1.00 O1G B:ANP600 2.0 63.1 1.0 O2B B:ANP600 2.2 63.1 1.0 O2G B:ANP600 2.2 63.1 1.0 PG B:ANP600 2.5 63.1 1.0 PB B:ANP600 2.9 63.1 1.0 O1B B:ANP600 3.0 63.1 1.0 OG1 B:THR176 3.2 39.0 1.0 N3B B:ANP600 3.2 63.1 1.0 O3G B:ANP600 3.9 63.1 1.0 O3A B:ANP600 4.4 63.1 1.0 CB B:THR176 4.5 39.0 1.0 NZ B:LYS175 4.7 45.6 1.0 CE B:LYS175 4.8 45.6 1.0 O2A B:ANP600 4.9 63.1 1.0 N B:THR176 4.9 39.0 1.0 OD1 B:ASP261 5.0 26.0 1.0

Magnesium binding site 3 out of 5 in the PS3 F1 Atpase Wild Type


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of PS3 F1 Atpase Wild Type within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:49.6 occ:1.00 O2B C:ANP600 2.0 47.0 1.0 OG1 C:THR176 2.0 36.2 1.0 O1G C:ANP600 2.3 47.0 1.0 PB C:ANP600 2.3 47.0 1.0 N3B C:ANP600 2.3 47.0 1.0 PG C:ANP600 2.6 47.0 1.0 O3A C:ANP600 2.7 47.0 1.0 CB C:THR176 2.8 36.2 1.0 O3G C:ANP600 3.0 47.0 1.0 CG2 C:THR176 3.7 36.2 1.0 O2A C:ANP600 3.8 47.0 1.0 O1B C:ANP600 3.8 47.0 1.0 PA C:ANP600 3.9 47.0 1.0 N C:THR176 3.9 36.2 1.0 CA C:THR176 4.0 36.2 1.0 O2G C:ANP600 4.1 47.0 1.0 OD2 C:ASP261 4.6 25.4 1.0 O1A C:ANP600 4.8 47.0 1.0 O5' C:ANP600 5.0 47.0 1.0 OD1 C:ASP261 5.0 25.4 1.0

Magnesium binding site 4 out of 5 in the PS3 F1 Atpase Wild Type


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of PS3 F1 Atpase Wild Type within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg501 b:36.4 occ:1.00 O1G D:ANP500 1.9 39.3 1.0 O2B D:ANP500 1.9 39.3 1.0 O2A D:ANP500 2.0 39.3 1.0 OG1 D:THR165 2.0 31.8 1.0 OE1 D:GLU190 2.6 28.7 1.0 PA D:ANP500 2.9 39.3 1.0 PB D:ANP500 3.0 39.3 1.0 PG D:ANP500 3.2 39.3 1.0 O3A D:ANP500 3.2 39.3 1.0 CB D:THR165 3.3 31.8 1.0 O1A D:ANP500 3.3 39.3 1.0 CD D:GLU190 3.3 28.7 1.0 OE2 D:GLU190 3.4 28.7 1.0 O3G D:ANP500 3.7 39.3 1.0 N3B D:ANP500 3.7 39.3 1.0 NH2 D:ARG191 3.9 30.9 1.0 CG2 D:THR165 4.1 31.8 1.0 N D:THR165 4.1 31.8 1.0 CA D:THR165 4.3 31.8 1.0 O1B D:ANP500 4.3 39.3 1.0 O5' D:ANP500 4.4 39.3 1.0 O2G D:ANP500 4.4 39.3 1.0 CG D:GLU190 4.7 28.7 1.0 CZ D:ARG191 5.0 30.9 1.0

Magnesium binding site 5 out of 5 in the PS3 F1 Atpase Wild Type


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of PS3 F1 Atpase Wild Type within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg501 b:35.1 occ:1.00 O2B F:ANP500 1.9 25.9 1.0 O1A F:ANP500 2.1 25.9 1.0 O1G F:ANP500 2.3 25.9 1.0 PA F:ANP500 2.4 25.9 1.0 O2A F:ANP500 2.5 25.9 1.0 O3A F:ANP500 2.7 25.9 1.0 PB F:ANP500 2.7 25.9 1.0 OG1 F:THR165 2.7 26.7 1.0 CB F:THR165 3.2 26.7 1.0 PG F:ANP500 3.4 25.9 1.0 N3B F:ANP500 3.5 25.9 1.0 O5' F:ANP500 4.0 25.9 1.0 NH1 F:ARG191 4.0 21.1 1.0 O1B F:ANP500 4.0 25.9 1.0 N F:THR165 4.2 26.7 1.0 O2G F:ANP500 4.2 25.9 1.0 CG2 F:THR165 4.3 26.7 1.0 CA F:THR165 4.3 26.7 1.0 NH2 B:ARG365 4.6 25.6 1.0 O3G F:ANP500 4.7 25.9 1.0 NE B:ARG365 4.9 25.6 1.0 C5' F:ANP500 4.9 25.9 1.0

E.J.Furlong, I.P.Reininger-Chatzigiannakis, Y.C.Zeng, S.H.J.Brown, M.Sobti, A.G.Stewart. The Molecular Structure of An Axle-Less F 1 -Atpase. Biochim Biophys Acta 49521 2024BIOENERG.
ISSN: ISSN 1879-2650
PubMed: 39428050
DOI: 10.1016/J.BBABIO.2024.149521