Magnesium in PDB 9ayp: Mycolicibacterium Smegmatis Clps with Bound CO2+

The structure of Mycolicibacterium Smegmatis Clps with Bound CO2+, PDB code: 9ayp was solved by C.J.Presloid, J.Jiang, P.C.Beardslee, H.R.Anderson, T.M.Swayne, K.R.Schmitz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.44 / 1.99
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.578, 52.145, 54.575, 90, 90, 90
R / Rfree (%)	16.3 / 18.7

The structure of Mycolicibacterium Smegmatis Clps with Bound CO2+ also contains other interesting chemical elements:

Cobalt

(Co)

8 atoms

The binding sites of Magnesium atom in the Mycolicibacterium Smegmatis Clps with Bound CO2+ (pdb code 9ayp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mycolicibacterium Smegmatis Clps with Bound CO2+, PDB code: 9ayp:

Magnesium binding site 1 out of 1 in the Mycolicibacterium Smegmatis Clps with Bound CO2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycolicibacterium Smegmatis Clps with Bound CO2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:29.8 occ:1.00 H A:TRP93 2.1 11.9 1.0 OD2 A:ASP34 2.6 14.1 1.0 O A:TRP32 2.6 10.1 1.0 N A:TRP93 2.9 9.9 1.0 HB2 A:TRP93 3.0 10.8 1.0 HA A:LEU92 3.1 9.6 1.0 HB3 A:ASP34 3.2 16.8 1.0 HG A:LEU92 3.4 11.4 1.0 HG13 A:VAL31 3.4 9.2 1.0 HB3 A:LEU92 3.5 8.9 1.0 HD22 A:ASN37 3.5 20.1 1.0 CB A:TRP93 3.6 9.0 1.0 CG A:ASP34 3.6 17.2 1.0 CA A:LEU92 3.7 7.9 1.0 CA A:TRP93 3.7 9.8 1.0 C A:LEU92 3.8 7.6 1.0 HG12 A:VAL31 3.8 9.2 1.0 C A:TRP32 3.9 7.5 1.0 CG A:TRP93 3.9 12.1 1.0 CB A:ASP34 3.9 13.9 1.0 CB A:LEU92 3.9 7.4 1.0 O A:HOH362 4.0 28.7 1.0 H A:ASP34 4.0 20.0 1.0 CG1 A:VAL31 4.0 7.6 1.0 H A:TRP32 4.1 12.4 1.0 CG A:LEU92 4.1 9.5 1.0 O A:TRP93 4.1 10.5 1.0 N A:ASP34 4.2 16.6 1.0 HG11 A:VAL31 4.2 9.2 1.0 ND2 A:ASN37 4.3 16.7 1.0 HA A:ASP33 4.3 11.9 1.0 CD1 A:TRP93 4.3 10.1 1.0 C A:TRP93 4.3 9.9 1.0 HD1 A:TRP93 4.4 12.2 1.0 HD21 A:ASN37 4.5 20.1 1.0 HB3 A:TRP93 4.5 10.8 1.0 N A:TRP32 4.5 10.3 1.0 C A:ASP33 4.5 18.9 1.0 CD2 A:TRP93 4.5 9.7 1.0 HA A:TRP93 4.6 11.8 1.0 HB2 A:ASP34 4.7 16.8 1.0 HD21 A:LEU92 4.7 10.0 1.0 CA A:ASP34 4.7 17.4 1.0 CA A:ASP33 4.7 9.9 1.0 OD1 A:ASP34 4.8 13.9 1.0 N A:ASP33 4.8 9.9 1.0 HG11 A:VAL64 4.8 12.7 1.0 CA A:TRP32 4.8 8.8 1.0 HB2 A:ASN37 4.8 20.2 1.0 HB2 A:TRP32 4.8 12.6 1.0 HB2 A:LEU92 4.9 8.9 1.0 HD11 A:LEU92 4.9 19.3 1.0 O A:LEU92 5.0 10.9 1.0 HE3 A:TRP93 5.0 15.3 1.0 CD2 A:LEU92 5.0 8.3 1.0

C.J.Presloid, J.Jiang, P.Kandel, H.R.Anderson, P.C.Beardslee, T.M.Swayne, K.R.Schmitz. Clps Directs Degradation of N-Degron Substrates with Primary Destabilizing Residues in Mycolicibacterium Smegmatis. Mol.Microbiol. 2024.
ISSN: ESSN 1365-2958
PubMed: 39626090
DOI: 10.1111/MMI.15334