Magnesium in PDB 9azp: INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin

The binding sites of Magnesium atom in the INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin (pdb code 9azp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin, PDB code: 9azp:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:93.3 occ:1.00 O1B A:ADP401 2.1 104.5 1.0 O1A A:ADP401 2.1 104.5 1.0 O3A A:ADP401 2.5 104.5 1.0 PB A:ADP401 2.5 104.5 1.0 O3B A:ADP401 2.6 104.5 1.0 PA A:ADP401 2.8 104.5 1.0 CA A:GLY156 3.5 96.3 1.0 O2A A:ADP401 3.8 104.5 1.0 O5' A:ADP401 4.0 104.5 1.0 O2B A:ADP401 4.0 104.5 1.0 N A:ASP157 4.0 99.0 1.0 NZ A:LYS18 4.1 108.2 1.0 C A:GLY156 4.3 96.3 1.0 CA A:GLY13 4.3 100.3 1.0 N A:GLY156 4.6 96.3 1.0 N A:SER14 4.7 100.5 1.0 CE A:LYS18 4.7 108.2 1.0 C A:GLY13 4.9 100.3 1.0 OD2 A:ASP11 5.0 102.8 1.0

Magnesium binding site 2 out of 7 in the INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:89.9 occ:1.00 O1A B:ADP401 2.1 105.2 1.0 O3B B:ADP401 2.2 105.2 1.0 O3A B:ADP401 2.4 105.2 1.0 PB B:ADP401 2.4 105.2 1.0 O1B B:ADP401 2.4 105.2 1.0 PA B:ADP401 2.8 105.2 1.0 CA B:GLY156 3.0 99.3 1.0 N B:ASP157 3.4 101.8 1.0 C B:GLY156 3.6 99.3 1.0 O2A B:ADP401 3.9 105.2 1.0 O5' B:ADP401 3.9 105.2 1.0 C5' B:ADP401 3.9 105.2 1.0 O2B B:ADP401 3.9 105.2 1.0 N B:GLY156 4.3 99.3 1.0 CA B:GLY13 4.6 100.5 1.0 O B:GLY156 4.6 99.3 1.0 CA B:ASP157 4.7 101.8 1.0 NZ B:LYS18 4.7 98.2 1.0 N B:SER14 4.7 100.9 1.0 CB B:ASP157 4.7 101.8 1.0 N B:GLY15 5.0 106.0 1.0

Magnesium binding site 3 out of 7 in the INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:100.5 occ:1.00 O3B C:ADP401 2.1 105.0 1.0 O1B C:ADP401 2.2 105.0 1.0 PB C:ADP401 2.5 105.0 1.0 O3A C:ADP401 2.9 105.0 1.0 OD2 C:ASP11 3.4 104.6 1.0 OE1 C:GLN137 3.5 102.3 1.0 CG2 C:VAL339 3.9 105.0 1.0 O2B C:ADP401 3.9 105.0 1.0 PA C:ADP401 4.1 105.0 1.0 O1A C:ADP401 4.1 105.0 1.0 OD1 C:ASP154 4.1 106.7 1.0 CG C:ASP11 4.4 104.6 1.0 CB C:VAL339 4.4 105.0 1.0 OD2 C:ASP154 4.5 106.7 1.0 OD1 C:ASP11 4.5 104.6 1.0 CE C:LYS18 4.6 98.6 1.0 CD C:GLN137 4.6 102.3 1.0 CG1 C:VAL339 4.7 105.0 1.0 CG C:ASP154 4.8 106.7 1.0 O2A C:ADP401 4.8 105.0 1.0 CA C:GLY156 4.9 108.8 1.0 NZ C:LYS18 4.9 98.6 1.0

Magnesium binding site 4 out of 7 in the INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:116.0 occ:1.00 O1A D:ADP401 2.1 122.4 1.0 O1B D:ADP401 2.1 122.4 1.0 O3A D:ADP401 2.4 122.4 1.0 PB D:ADP401 2.4 122.4 1.0 O3B D:ADP401 2.5 122.4 1.0 PA D:ADP401 2.7 122.4 1.0 CA D:GLY156 3.5 120.8 1.0 O2A D:ADP401 3.7 122.4 1.0 O5' D:ADP401 3.9 122.4 1.0 O2B D:ADP401 4.0 122.4 1.0 N D:ASP157 4.0 120.5 1.0 C D:GLY156 4.2 120.8 1.0 NZ D:LYS18 4.2 110.6 1.0 CA D:GLY13 4.2 106.9 1.0 N D:SER14 4.6 114.6 1.0 OD2 D:ASP11 4.6 113.1 1.0 N D:GLY156 4.7 120.8 1.0 CE D:LYS18 4.9 110.6 1.0 C D:GLY13 4.9 106.9 1.0 C5' D:ADP401 5.0 122.4 1.0

Magnesium binding site 5 out of 7 in the INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:112.6 occ:1.00 O1B E:ADP401 2.1 114.0 1.0 O3B E:ADP401 2.1 114.0 1.0 PB E:ADP401 2.5 114.0 1.0 O3A E:ADP401 3.2 114.0 1.0 OE1 E:GLN137 3.2 119.0 1.0 OD2 E:ASP11 3.2 110.0 1.0 O2B E:ADP401 3.9 114.0 1.0 CG2 E:VAL339 4.0 111.1 1.0 CG E:ASP11 4.1 110.0 1.0 OD1 E:ASP11 4.1 110.0 1.0 PA E:ADP401 4.2 114.0 1.0 CD E:GLN137 4.3 119.0 1.0 O1A E:ADP401 4.3 114.0 1.0 OD2 E:ASP154 4.5 113.3 1.0 OD1 E:ASP154 4.6 113.3 1.0 CB E:VAL339 4.7 111.1 1.0 CE E:LYS18 4.7 104.8 1.0 O2A E:ADP401 4.7 114.0 1.0 CA E:GLY13 4.8 109.8 1.0 NE2 E:GLN137 4.8 119.0 1.0 CG1 E:VAL339 4.9 111.1 1.0 CA E:GLY156 4.9 108.4 1.0

Magnesium binding site 6 out of 7 in the INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:137.8 occ:1.00 O1B F:ADP401 2.1 146.1 1.0 O3A F:ADP401 2.1 146.1 1.0 O1A F:ADP401 2.5 146.1 1.0 PB F:ADP401 2.5 146.1 1.0 PA F:ADP401 2.7 146.1 1.0 O3B F:ADP401 3.2 146.1 1.0 O2A F:ADP401 3.4 146.1 1.0 O2B F:ADP401 3.9 146.1 1.0 NZ F:LYS18 3.9 130.3 1.0 O5' F:ADP401 4.1 146.1 1.0 OD2 F:ASP11 4.2 140.9 1.0 CA F:GLY13 4.4 137.8 1.0 CA F:GLY156 4.5 154.6 1.0 CE F:LYS18 4.5 130.3 1.0 N F:SER14 4.8 143.5 1.0

Magnesium binding site 7 out of 7 in the INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1002 b:234.8 occ:1.00 OD2 I:ASP11 2.1 230.2 1.0 O2B I:ATP1001 2.1 268.6 1.0 OD1 I:ASP11 2.4 230.2 1.0 CG I:ASP11 2.5 230.2 1.0 O2G I:ATP1001 3.3 268.6 1.0 NZ I:LYS18 3.6 249.6 1.0 PB I:ATP1001 3.6 268.6 1.0 CA I:GLY13 3.6 252.1 1.0 O3G I:ATP1001 3.9 268.6 1.0 CB I:ASP11 4.0 230.2 1.0 PG I:ATP1001 4.0 268.6 1.0 O3B I:ATP1001 4.1 268.6 1.0 N I:GLY13 4.1 252.1 1.0 C I:ASN12 4.4 233.0 1.0 O I:ASN12 4.4 233.0 1.0 O3A I:ATP1001 4.5 268.6 1.0 O2A I:ATP1001 4.5 268.6 1.0 O1B I:ATP1001 4.5 268.6 1.0 C I:ASP11 4.6 230.2 1.0 NE2 I:GLN137 4.6 244.2 1.0 CD I:GLN137 4.7 244.2 1.0 O I:LEU16 4.8 261.3 1.0 CA I:ASP11 4.8 230.2 1.0 O I:ASP11 4.8 230.2 1.0 O1A I:ATP1001 4.8 268.6 1.0 N I:ASN12 4.9 233.0 1.0 PA I:ATP1001 4.9 268.6 1.0 CE I:LYS18 4.9 249.6 1.0 C I:GLY13 4.9 252.1 1.0 CG I:GLN137 4.9 244.2 1.0 CG2 I:VAL339 4.9 242.4 1.0 CD I:LYS18 5.0 249.6 1.0

N.J.Palmer, K.R.Barrie, R.Dominguez. Mechanisms of Actin Filament Severing and Elongation By Formins To Be Published.