Magnesium in PDB 9b03: INF2 in the Middle of F-Actin (Up State)

The binding sites of Magnesium atom in the INF2 in the Middle of F-Actin (Up State) (pdb code 9b03). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the INF2 in the Middle of F-Actin (Up State), PDB code: 9b03:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the INF2 in the Middle of F-Actin (Up State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of INF2 in the Middle of F-Actin (Up State) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:103.4 occ:1.00 O1B A:ADP401 2.7 133.2 1.0 O1A A:ADP401 2.9 129.9 1.0 O3B A:ADP401 2.9 137.5 1.0 PB A:ADP401 3.2 140.0 1.0 O3A A:ADP401 3.3 134.1 1.0 CA A:GLY156 3.4 126.5 1.0 PA A:ADP401 3.7 128.7 1.0 N A:ASP157 4.1 123.4 1.0 CA A:GLY13 4.2 147.3 1.0 OE1 A:GLN137 4.3 139.1 1.0 C A:GLY156 4.3 122.5 1.0 N A:GLY156 4.4 123.1 1.0 N A:SER14 4.6 136.0 1.0 O2B A:ADP401 4.7 142.0 1.0 O2A A:ADP401 4.8 140.4 1.0 O5' A:ADP401 4.8 130.1 1.0 NZ A:LYS18 4.9 142.3 1.0 OD2 A:ASP11 4.9 156.9 1.0 C A:GLY13 4.9 148.3 1.0

Magnesium binding site 2 out of 6 in the INF2 in the Middle of F-Actin (Up State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of INF2 in the Middle of F-Actin (Up State) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:88.8 occ:1.00 O3B B:ADP401 3.2 108.6 1.0 O1B B:ADP401 3.5 100.6 1.0 CA B:GLY156 3.6 100.7 1.0 O1A B:ADP401 3.9 94.2 1.0 PB B:ADP401 3.9 116.6 1.0 OE1 B:GLN137 3.9 121.9 1.0 CA B:GLY13 4.0 106.3 1.0 NE2 B:GLN137 4.2 115.0 1.0 N B:GLY156 4.4 94.7 1.0 CD B:GLN137 4.5 117.1 1.0 OD2 B:ASP11 4.5 125.5 1.0 N B:ASP157 4.5 95.5 1.0 O3A B:ADP401 4.5 113.9 1.0 OD2 B:ASP154 4.6 106.3 1.0 C B:GLY156 4.6 92.6 1.0 OD1 B:ASP11 4.6 116.8 1.0 N B:SER14 4.7 101.1 1.0 PA B:ADP401 4.8 107.6 1.0 C B:GLY13 5.0 108.8 1.0 CG B:ASP11 5.0 120.5 1.0

Magnesium binding site 3 out of 6 in the INF2 in the Middle of F-Actin (Up State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of INF2 in the Middle of F-Actin (Up State) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:68.0 occ:1.00 O3B C:ADP401 2.1 93.5 1.0 O1B C:ADP401 2.3 94.7 1.0 PB C:ADP401 2.5 101.1 1.0 O3A C:ADP401 3.1 91.3 1.0 OD2 C:ASP11 3.2 103.7 1.0 OD1 C:ASP11 3.8 83.6 1.0 NE2 C:GLN137 3.8 86.4 1.0 OE1 C:GLN137 3.8 96.0 1.0 CD C:GLN137 3.9 89.8 1.0 CG C:ASP11 3.9 94.7 1.0 O2B C:ADP401 4.0 73.6 1.0 OD1 C:ASP154 4.1 91.4 1.0 PA C:ADP401 4.4 74.7 1.0 CG2 C:VAL339 4.6 67.4 1.0 OD2 C:ASP154 4.6 91.2 1.0 O1A C:ADP401 4.6 93.0 1.0 CA C:GLY156 4.8 82.5 1.0 CA C:GLY13 4.8 86.7 1.0 CE C:LYS18 4.8 65.8 1.0 CG C:ASP154 4.8 91.1 1.0 CG C:GLN137 4.9 88.0 1.0 O2A C:ADP401 4.9 74.9 1.0 NZ C:LYS18 4.9 67.3 1.0 CB C:VAL339 5.0 69.9 1.0

Magnesium binding site 4 out of 6 in the INF2 in the Middle of F-Actin (Up State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of INF2 in the Middle of F-Actin (Up State) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:52.0 occ:1.00 O1A D:ADP401 3.1 74.3 1.0 OD2 D:ASP11 3.2 91.8 1.0 OE1 D:GLN137 3.4 105.5 1.0 O1B D:ADP401 3.4 93.5 1.0 OD1 D:ASP11 3.6 83.9 1.0 CG D:ASP11 3.8 86.4 1.0 CD D:GLN137 4.1 95.3 1.0 NE2 D:GLN137 4.2 90.4 1.0 CA D:GLY156 4.3 92.2 1.0 PA D:ADP401 4.4 72.3 1.0 PB D:ADP401 4.4 114.0 1.0 O3B D:ADP401 4.4 97.9 1.0 OD1 D:ASP154 4.5 92.7 1.0 O3A D:ADP401 4.5 94.5 1.0 CA D:GLY13 4.6 67.8 1.0 OD2 D:ASP154 4.7 90.1 1.0 CG2 D:VAL339 4.9 71.7 1.0 N D:GLY156 4.9 87.3 1.0

Magnesium binding site 5 out of 6 in the INF2 in the Middle of F-Actin (Up State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of INF2 in the Middle of F-Actin (Up State) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:75.8 occ:1.00 O1A E:ADP401 2.9 93.9 1.0 O1B E:ADP401 3.4 111.9 1.0 OE1 E:GLN137 3.5 113.4 1.0 OD2 E:ASP11 3.6 100.3 1.0 OD1 E:ASP11 4.1 99.3 1.0 PA E:ADP401 4.2 94.6 1.0 CD E:GLN137 4.2 111.1 1.0 CA E:GLY156 4.2 85.1 1.0 OD2 E:ASP154 4.2 111.7 1.0 NE2 E:GLN137 4.2 108.4 1.0 O3B E:ADP401 4.3 100.0 1.0 CG E:ASP11 4.3 98.2 1.0 PB E:ADP401 4.3 129.0 1.0 O3A E:ADP401 4.5 111.6 1.0 CA E:GLY13 4.6 71.1 1.0 OD1 E:ASP154 4.9 99.1 1.0 CG2 E:VAL339 4.9 105.1 1.0 N E:GLY156 4.9 82.3 1.0 O2A E:ADP401 4.9 103.6 1.0 CG1 E:VAL339 5.0 106.4 1.0

Magnesium binding site 6 out of 6 in the INF2 in the Middle of F-Actin (Up State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of INF2 in the Middle of F-Actin (Up State) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:92.3 occ:1.00 O1B F:ADP401 2.2 119.5 1.0 O3B F:ADP401 2.5 119.7 1.0 PB F:ADP401 2.6 122.5 1.0 O3A F:ADP401 2.9 121.7 1.0 O1A F:ADP401 3.0 117.5 1.0 PA F:ADP401 3.4 124.8 1.0 CA F:GLY156 4.0 116.9 1.0 OE1 F:GLN137 4.1 135.6 1.0 O2B F:ADP401 4.1 127.1 1.0 O2A F:ADP401 4.2 126.0 1.0 CA F:GLY13 4.3 108.4 1.0 OD2 F:ASP11 4.3 127.1 1.0 OD2 F:ASP154 4.7 129.3 1.0 N F:SER14 4.8 103.3 1.0 O5' F:ADP401 4.8 116.2 1.0 CD F:GLN137 4.8 134.5 1.0 NE2 F:GLN137 4.8 132.8 1.0 N F:GLY156 4.8 116.9 1.0 OD1 F:ASP11 4.9 124.7 1.0 NZ F:LYS18 4.9 118.9 1.0

N.J.Palmer, K.R.Barrie, R.Dominguez. Mechanisms of Actin Filament Severing and Elongation By Formins To Be Published.