Magnesium in PDB 9bmh: State-4 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atpvi

The structure of State-4 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atpvi also contains other interesting chemical elements:

Vanadium

(V)

1 atom

The binding sites of Magnesium atom in the State-4 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atpvi (pdb code 9bmh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the State-4 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atpvi, PDB code: 9bmh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the State-4 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atpvi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-4 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atpvi within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:22.8 occ:1.00 OG A:SER2231 1.5 43.3 1.0 OE2 A:GLU2344 1.5 32.6 1.0 O2B A:ATP4702 2.0 54.6 1.0 CD A:GLU2344 2.5 34.1 1.0 O2G A:ATP4702 2.6 56.5 1.0 OE1 A:GLU2344 2.8 42.6 1.0 CB A:SER2231 2.9 36.5 1.0 PB A:ATP4702 3.4 27.8 1.0 N A:SER2231 3.7 39.5 1.0 PG A:ATP4702 3.7 45.3 1.0 OD2 A:ASP2304 3.8 46.9 1.0 CA A:SER2231 3.8 28.6 1.0 CG A:GLU2344 3.8 28.7 1.0 O3B A:ATP4702 4.0 40.5 1.0 NH2 A:ARG2726 4.0 33.3 1.0 O1A A:ATP4702 4.2 53.9 1.0 O1G A:ATP4702 4.2 57.1 1.0 OD1 A:ASP2304 4.2 45.3 1.0 O1B A:ATP4702 4.3 62.5 1.0 CG A:ASP2304 4.3 40.4 1.0 O3A A:ATP4702 4.5 38.6 1.0 NH2 A:ARG2684 4.5 48.6 1.0 C A:LYS2230 4.8 39.6 1.0 CB A:GLU2344 4.9 29.9 1.0 CB A:LYS2230 4.9 46.1 1.0 PA A:ATP4702 4.9 28.4 1.0 CE A:LYS2230 4.9 36.3 1.0 O3G A:ATP4702 5.0 55.1 1.0

Magnesium binding site 2 out of 2 in the State-4 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atpvi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of State-4 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atpvi within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4706 b:30.2 occ:1.00 OG1 A:THR1913 2.0 45.4 1.0 O3B A:AOV4701 2.3 59.3 1.0 O2B A:AOV4701 2.6 58.0 1.0 PB A:AOV4701 3.1 36.5 1.0 CB A:THR1913 3.1 37.4 1.0 O3G A:AOV4701 3.5 58.7 1.0 VG A:AOV4701 3.9 61.8 1.0 O3A A:AOV4701 3.9 53.1 1.0 N A:THR1913 4.0 27.5 1.0 NH2 A:ARG2358 4.0 32.0 1.0 OD1 A:ASP1958 4.1 53.7 1.0 OG1 A:THR2017 4.1 46.4 1.0 CG2 A:THR1913 4.1 37.3 1.0 CA A:THR1913 4.1 28.5 1.0 CG A:ASP1958 4.2 52.3 1.0 O1B A:AOV4701 4.3 53.8 1.0 O2A A:AOV4701 4.4 55.1 1.0 O1A A:AOV4701 4.4 51.0 1.0 PA A:AOV4701 4.5 35.3 1.0 OD2 A:ASP2320 4.5 49.4 1.0 CB A:ASP1958 4.6 38.6 1.0 OD2 A:ASP1958 4.7 43.4 1.0 O4G A:AOV4701 4.7 60.5 1.0 OE1 A:GLU1959 4.7 56.7 1.0 NH2 A:ARG2091 4.9 32.8 1.0 CB A:THR2017 4.9 37.8 1.0 OE2 A:GLU1959 5.0 45.8 1.0 O1G A:AOV4701 5.0 44.1 1.0 CB A:LYS1912 5.0 24.9 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.