Magnesium in PDB 9bmj: State-1 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp

The binding sites of Magnesium atom in the State-1 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp (pdb code 9bmj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the State-1 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp, PDB code: 9bmj:

Magnesium binding site 1 out of 1 in the State-1 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-1 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:19.5 occ:1.00 OE2 A:GLU2344 2.0 24.1 1.0 O2G A:ATP4702 2.4 30.8 1.0 CB A:SER2231 2.7 16.8 1.0 O2B A:ATP4702 2.7 24.4 1.0 CD A:GLU2344 3.0 22.9 1.0 OE2 A:GLU2688 3.3 33.2 1.0 OG A:SER2231 3.4 20.3 1.0 OE1 A:GLU2344 3.4 22.6 1.0 OD2 A:ASP2304 3.6 28.4 1.0 O3B A:ATP4702 3.6 26.0 1.0 PG A:ATP4702 3.6 36.4 1.0 O1A A:ATP4702 3.7 25.6 1.0 PB A:ATP4702 3.8 24.7 1.0 CA A:SER2231 3.9 15.7 1.0 N A:SER2231 4.1 17.0 1.0 CG A:GLU2344 4.3 19.9 1.0 NH2 A:ARG2684 4.3 29.5 1.0 CD A:GLU2688 4.4 35.0 1.0 O1G A:ATP4702 4.4 27.3 1.0 CG A:ASP2304 4.5 27.5 1.0 O3A A:ATP4702 4.5 20.5 1.0 OD1 A:ASP2304 4.6 28.7 1.0 PA A:ATP4702 4.7 21.5 1.0 O3G A:ATP4702 4.7 37.0 1.0 OE1 A:GLU2688 4.8 33.2 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.