Magnesium in PDB 9bml: State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp

The binding sites of Magnesium atom in the State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp (pdb code 9bml). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp, PDB code: 9bml:

Magnesium binding site 1 out of 1 in the State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:45.7 occ:1.00 O2G A:ATP4702 1.9 70.4 1.0 OG A:SER2231 2.0 53.8 1.0 O2B A:ATP4702 2.3 69.3 1.0 OE2 A:GLU2344 2.5 51.1 1.0 CB A:SER2231 3.0 47.6 1.0 O3B A:ATP4702 3.0 60.6 1.0 PG A:ATP4702 3.1 74.0 1.0 PB A:ATP4702 3.2 67.8 1.0 O1A A:ATP4702 3.3 72.2 1.0 CD A:GLU2344 3.5 58.8 1.0 OE2 A:GLU2688 3.6 72.5 1.0 O3A A:ATP4702 3.8 58.4 1.0 O3G A:ATP4702 4.0 72.3 1.0 N A:SER2231 4.0 53.8 1.0 PA A:ATP4702 4.0 73.2 1.0 OE1 A:GLU2344 4.1 65.1 1.0 CA A:SER2231 4.1 47.6 1.0 O1G A:ATP4702 4.2 63.6 1.0 NH1 A:ARG2729 4.3 58.8 1.0 OD2 A:ASP2304 4.4 65.0 1.0 CD A:GLU2688 4.4 75.9 1.0 O1B A:ATP4702 4.5 74.6 1.0 OE1 A:GLU2688 4.6 74.5 1.0 NH2 A:ARG2726 4.6 58.2 1.0 CG A:GLU2344 4.7 50.3 1.0 O2A A:ATP4702 4.8 72.6 1.0 NH2 A:ARG2684 4.8 64.1 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.