Magnesium in PDB 9bmm: State-4 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp

The binding sites of Magnesium atom in the State-4 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp (pdb code 9bmm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the State-4 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp, PDB code: 9bmm:

Magnesium binding site 1 out of 1 in the State-4 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-4 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:21.3 occ:1.00 OG A:SER2231 1.9 33.0 1.0 O2G A:ATP4702 2.0 48.3 1.0 OE2 A:GLU2344 2.0 29.4 1.0 O2B A:ATP4702 2.7 50.5 1.0 CD A:GLU2344 3.2 32.0 1.0 PG A:ATP4702 3.2 51.3 1.0 CB A:SER2231 3.2 32.5 1.0 O3B A:ATP4702 3.2 40.7 1.0 OE2 A:GLU2688 3.3 38.7 1.0 O1A A:ATP4702 3.3 48.9 1.0 PB A:ATP4702 3.5 45.2 1.0 OE1 A:GLU2344 3.6 42.4 1.0 OD2 A:ASP2304 3.9 44.9 1.0 O3G A:ATP4702 4.1 56.6 1.0 N A:SER2231 4.1 36.6 1.0 CA A:SER2231 4.2 33.1 1.0 CD A:GLU2688 4.2 40.6 1.0 NH2 A:ARG2726 4.2 28.1 1.0 O1G A:ATP4702 4.2 41.2 1.0 O3A A:ATP4702 4.3 28.2 1.0 PA A:ATP4702 4.3 44.9 1.0 OE1 A:GLU2688 4.4 38.0 1.0 CG A:GLU2344 4.4 20.1 1.0 OD1 A:ASP2304 4.6 41.8 1.0 CG A:ASP2304 4.6 40.7 1.0 NH1 A:ARG2729 4.6 26.9 1.0 O1B A:ATP4702 4.8 57.9 1.0 O2A A:ATP4702 4.8 53.1 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.