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Magnesium in PDB 9bmv: State-7A-POST1 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Adp

Magnesium Binding Sites:

The binding sites of Magnesium atom in the State-7A-POST1 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Adp (pdb code 9bmv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the State-7A-POST1 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Adp, PDB code: 9bmv:

Magnesium binding site 1 out of 1 in 9bmv

Go back to Magnesium Binding Sites List in 9bmv
Magnesium binding site 1 out of 1 in the State-7A-POST1 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-7A-POST1 of Motor Domain From Full-Length Human Dynein-1 in 5 Mm Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg4705

b:91.0
occ:1.00
O3B A:ATP4702 1.9 99.8 1.0
O1B A:ATP4702 2.0 99.8 1.0
O2G A:ATP4702 2.1 99.8 1.0
PB A:ATP4702 2.3 99.8 1.0
PG A:ATP4702 2.5 99.8 1.0
OG A:SER2231 3.1 91.5 1.0
OE2 A:GLU2344 3.1 97.2 1.0
O3G A:ATP4702 3.1 99.8 1.0
O3A A:ATP4702 3.5 99.8 1.0
O2B A:ATP4702 3.5 99.8 1.0
O1G A:ATP4702 3.8 99.8 1.0
NH2 A:ARG2726 3.9 94.0 1.0
NH2 A:ARG2729 3.9 85.8 1.0
NH1 A:ARG2726 4.0 94.0 1.0
CD A:GLU2344 4.1 97.2 1.0
O2A A:ATP4702 4.2 99.8 1.0
CB A:SER2231 4.3 91.5 1.0
CZ A:ARG2726 4.3 94.0 1.0
PA A:ATP4702 4.4 99.8 1.0
NZ A:LYS2230 4.6 89.3 1.0
CE A:LYS2230 4.6 89.3 1.0
N A:SER2231 4.6 91.5 1.0
OD1 A:ASP2304 4.7 105.2 1.0
OE1 A:GLU2344 4.8 97.2 1.0
O1A A:ATP4702 4.8 99.8 1.0
CG A:GLU2344 4.9 97.2 1.0
CZ A:ARG2729 4.9 85.8 1.0
NH1 A:ARG2729 5.0 85.8 1.0

Reference:

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.
Page generated: Fri Aug 15 23:25:53 2025

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