Magnesium in PDB 9bn0: State-7 of Motor Domain From Full-Length Human Dynein-1 in Apo Condition

The binding sites of Magnesium atom in the State-7 of Motor Domain From Full-Length Human Dynein-1 in Apo Condition (pdb code 9bn0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the State-7 of Motor Domain From Full-Length Human Dynein-1 in Apo Condition, PDB code: 9bn0:

Magnesium binding site 1 out of 1 in the State-7 of Motor Domain From Full-Length Human Dynein-1 in Apo Condition


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-7 of Motor Domain From Full-Length Human Dynein-1 in Apo Condition within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:20.1 occ:1.00 O1B A:ATP4702 1.5 33.3 1.0 OG A:SER2231 1.9 16.9 1.0 OE2 A:GLU2344 2.4 18.7 1.0 PB A:ATP4702 3.0 33.3 1.0 CB A:SER2231 3.1 16.9 1.0 O2G A:ATP4702 3.2 33.3 1.0 CD A:GLU2344 3.3 18.7 1.0 OE2 A:GLU2688 3.5 27.0 1.0 OE1 A:GLU2344 3.6 18.7 1.0 O3B A:ATP4702 3.7 33.3 1.0 OD2 A:ASP2304 3.8 22.4 1.0 O2B A:ATP4702 3.9 33.3 1.0 O3A A:ATP4702 3.9 33.3 1.0 N A:SER2231 4.0 16.9 1.0 CA A:SER2231 4.1 16.9 1.0 PG A:ATP4702 4.1 33.3 1.0 O2A A:ATP4702 4.2 33.3 1.0 PA A:ATP4702 4.4 33.3 1.0 O1A A:ATP4702 4.4 33.3 1.0 OD1 A:ASP2304 4.5 22.4 1.0 CD A:GLU2688 4.6 27.0 1.0 CG A:ASP2304 4.6 22.4 1.0 CG A:GLU2344 4.6 18.7 1.0 NH2 A:ARG2726 4.8 24.8 1.0 NH1 A:ARG2684 4.8 28.7 1.0 O3G A:ATP4702 4.9 33.3 1.0 OE1 A:GLU2688 5.0 27.0 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.