Magnesium in PDB 9bn1: State-8 of Motor Domain From Full-Length Human Dynein-1 in Apo Condition

The binding sites of Magnesium atom in the State-8 of Motor Domain From Full-Length Human Dynein-1 in Apo Condition (pdb code 9bn1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the State-8 of Motor Domain From Full-Length Human Dynein-1 in Apo Condition, PDB code: 9bn1:

Magnesium binding site 1 out of 1 in the State-8 of Motor Domain From Full-Length Human Dynein-1 in Apo Condition


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-8 of Motor Domain From Full-Length Human Dynein-1 in Apo Condition within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4704 b:97.3 occ:1.00 O1B A:ATP4701 1.9 87.4 1.0 OE2 A:GLU2344 1.9 93.8 1.0 CB A:SER2231 2.3 90.1 1.0 O2B A:ATP4701 2.5 87.4 1.0 PB A:ATP4701 2.6 87.4 1.0 CD A:GLU2344 2.6 93.8 1.0 OE1 A:GLU2344 2.8 93.8 1.0 OG A:SER2231 2.9 90.1 1.0 OE2 A:GLU2688 3.4 105.7 1.0 OD2 A:ASP2304 3.6 111.1 1.0 O3B A:ATP4701 3.6 87.4 1.0 CA A:SER2231 3.6 90.1 1.0 O3A A:ATP4701 3.9 87.4 1.0 O3G A:ATP4701 4.0 87.4 1.0 CG A:GLU2344 4.1 93.8 1.0 N A:SER2231 4.1 90.1 1.0 PG A:ATP4701 4.5 87.4 1.0 CG A:ASP2304 4.5 111.1 1.0 CD A:GLU2688 4.6 105.7 1.0 OD1 A:ASP2304 4.8 111.1 1.0 C A:SER2231 4.8 90.1 1.0 CG A:LYS2230 4.9 87.4 1.0 O2G A:ATP4701 4.9 87.4 1.0 NH2 A:ARG2726 5.0 87.5 1.0 NH1 A:ARG2684 5.0 104.2 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.