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Magnesium in PDB 9bpm: Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant (pdb code 9bpm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant, PDB code: 9bpm:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 9bpm

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Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:76.0
occ:1.00
O3B A:ADP401 2.6 79.5 1.0
O2B A:ADP401 2.8 83.7 1.0
PB A:ADP401 2.9 81.5 1.0
O3A A:ADP401 2.9 66.9 1.0
O2A A:ADP401 3.9 74.8 1.0
PA A:ADP401 4.0 71.0 1.0
NE2 A:GLN137 4.3 71.2 1.0
OE1 A:GLN137 4.3 71.7 1.0
O1B A:ADP401 4.4 63.2 1.0
CD A:GLN137 4.5 70.0 1.0
OD2 A:ASP11 4.6 79.7 1.0
OD1 A:ASP154 4.6 70.5 1.0
OD2 A:ASP154 4.8 73.5 1.0
CA A:GLY156 4.8 72.1 1.0
O1A A:ADP401 4.9 73.5 1.0

Magnesium binding site 2 out of 4 in 9bpm

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Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:76.0
occ:1.00
O3B B:ADP401 2.6 79.5 1.0
O2B B:ADP401 2.8 83.7 1.0
PB B:ADP401 2.9 81.5 1.0
O3A B:ADP401 2.9 66.9 1.0
O2A B:ADP401 3.9 74.8 1.0
PA B:ADP401 4.0 71.0 1.0
NE2 B:GLN137 4.3 71.2 1.0
OE1 B:GLN137 4.3 71.7 1.0
O1B B:ADP401 4.4 63.2 1.0
CD B:GLN137 4.5 70.0 1.0
OD2 B:ASP11 4.6 79.7 1.0
OD1 B:ASP154 4.6 70.5 1.0
OD2 B:ASP154 4.8 73.5 1.0
CA B:GLY156 4.8 72.1 1.0
O1A B:ADP401 4.9 73.5 1.0

Magnesium binding site 3 out of 4 in 9bpm

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Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:76.0
occ:1.00
O3B C:ADP401 2.6 79.5 1.0
O2B C:ADP401 2.8 83.7 1.0
PB C:ADP401 2.9 81.5 1.0
O3A C:ADP401 2.9 66.9 1.0
O2A C:ADP401 3.9 74.8 1.0
PA C:ADP401 4.0 71.0 1.0
NE2 C:GLN137 4.3 71.2 1.0
OE1 C:GLN137 4.3 71.7 1.0
O1B C:ADP401 4.4 63.2 1.0
CD C:GLN137 4.5 70.0 1.0
OD2 C:ASP11 4.6 79.7 1.0
OD1 C:ASP154 4.6 70.5 1.0
OD2 C:ASP154 4.8 73.5 1.0
CA C:GLY156 4.8 72.1 1.0
O1A C:ADP401 4.9 73.5 1.0

Magnesium binding site 4 out of 4 in 9bpm

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Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:76.0
occ:1.00
O3B D:ADP401 2.6 79.5 1.0
O2B D:ADP401 2.8 83.7 1.0
PB D:ADP401 2.9 81.5 1.0
O3A D:ADP401 2.9 66.9 1.0
O2A D:ADP401 3.9 74.8 1.0
PA D:ADP401 4.0 71.0 1.0
NE2 D:GLN137 4.3 71.2 1.0
OE1 D:GLN137 4.3 71.7 1.0
O1B D:ADP401 4.4 63.2 1.0
CD D:GLN137 4.5 70.0 1.0
OD2 D:ASP11 4.6 79.7 1.0
OD1 D:ASP154 4.6 70.5 1.0
OD2 D:ASP154 4.8 73.5 1.0
CA D:GLY156 4.8 72.1 1.0
O1A D:ADP401 4.9 73.5 1.0

Reference:

H.L.Huang, S.M.Heissler, K.Chinthalapudi. Cryo-Em Structure of Cardiac Muscle Alpha-Actin A331P Hcm Mutant To Be Published.
Page generated: Fri Aug 15 23:27:04 2025

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