Magnesium in PDB 9byh: Consensus Model For Turnover Condition of Bacillus Subtilis Ribonucleotide Reductase Complex

All present enzymatic activity of Consensus Model For Turnover Condition of Bacillus Subtilis Ribonucleotide Reductase Complex:
1.17.4.1;

The binding sites of Magnesium atom in the Consensus Model For Turnover Condition of Bacillus Subtilis Ribonucleotide Reductase Complex (pdb code 9byh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Consensus Model For Turnover Condition of Bacillus Subtilis Ribonucleotide Reductase Complex, PDB code: 9byh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Consensus Model For Turnover Condition of Bacillus Subtilis Ribonucleotide Reductase Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Consensus Model For Turnover Condition of Bacillus Subtilis Ribonucleotide Reductase Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:17.4 occ:1.00 O2A A:TTP803 2.1 30.7 1.0 O1G A:TTP803 2.4 32.5 1.0 O1B A:TTP803 2.8 28.4 1.0 PA A:TTP803 3.3 18.4 1.0 O3A A:TTP803 3.5 29.9 1.0 PB A:TTP803 3.7 31.9 1.0 PG A:TTP803 3.7 25.8 1.0 O A:ASP177 3.7 34.5 1.0 O5' A:TTP803 3.9 23.0 1.0 NH2 A:ARG207 4.0 19.4 1.0 CB A:SER178 4.1 16.4 1.0 O3G A:TTP803 4.1 18.6 1.0 O3B A:TTP803 4.2 27.6 1.0 O1A A:TTP803 4.5 19.9 1.0 CA A:SER178 4.5 16.9 1.0 C A:ASP177 4.8 24.4 1.0 O2G A:TTP803 4.9 34.9 1.0 C5' A:TTP803 4.9 21.0 1.0

Magnesium binding site 2 out of 2 in the Consensus Model For Turnover Condition of Bacillus Subtilis Ribonucleotide Reductase Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Consensus Model For Turnover Condition of Bacillus Subtilis Ribonucleotide Reductase Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:36.9 occ:1.00 O2A B:TTP801 2.0 21.6 1.0 O3G B:TTP801 2.2 34.3 1.0 O1B B:TTP801 2.5 32.0 1.0 PG B:TTP801 3.4 31.4 1.0 PA B:TTP801 3.4 23.5 1.0 PB B:TTP801 3.6 29.4 1.0 O1G B:TTP801 3.9 33.9 1.0 O3B B:TTP801 3.9 19.0 1.0 O B:ASP177 3.9 26.9 1.0 O3A B:TTP801 4.0 32.1 1.0 NH2 B:ARG207 4.1 21.0 1.0 CB B:SER178 4.2 13.3 1.0 O1A B:TTP801 4.2 30.3 1.0 C5' B:TTP801 4.5 24.4 1.0 O5' B:TTP801 4.5 24.7 1.0 CA B:SER178 4.6 18.0 1.0 O2G B:TTP801 4.6 22.4 1.0 O2B B:TTP801 4.9 29.0 1.0

D.Xu, W.C.Thomas, A.A.Burnim, N.Ando. Conformational Landscapes of A Class I Ribonucleotide Reductase Complex During Turnover Reveal Intrinsic Dynamics and Asymmetry Nat Commun V. 16 2458 2025.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-025-57735-4