Magnesium in PDB 9c5b: Ap-3 Bound to Myristoylated ARF1 (Q71L) and Lampi on A Lipid Nanodisc; Combined Map

All present enzymatic activity of Ap-3 Bound to Myristoylated ARF1 (Q71L) and Lampi on A Lipid Nanodisc; Combined Map:
3.6.5.2;

The binding sites of Magnesium atom in the Ap-3 Bound to Myristoylated ARF1 (Q71L) and Lampi on A Lipid Nanodisc; Combined Map (pdb code 9c5b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ap-3 Bound to Myristoylated ARF1 (Q71L) and Lampi on A Lipid Nanodisc; Combined Map, PDB code: 9c5b:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ap-3 Bound to Myristoylated ARF1 (Q71L) and Lampi on A Lipid Nanodisc; Combined Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ap-3 Bound to Myristoylated ARF1 (Q71L) and Lampi on A Lipid Nanodisc; Combined Map within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:241.1 occ:1.00 O2G A:GTP202 1.9 258.6 1.0 OG1 A:THR31 2.1 274.3 1.0 O2B A:GTP202 2.2 258.6 1.0 OG1 A:THR48 2.5 223.8 1.0 PG A:GTP202 3.1 258.6 1.0 CB A:THR31 3.3 274.3 1.0 PB A:GTP202 3.4 258.6 1.0 O3B A:GTP202 3.5 258.6 1.0 CB A:THR48 3.6 223.8 1.0 O3G A:GTP202 3.6 258.6 1.0 N A:THR31 4.1 274.3 1.0 OD2 A:ASP67 4.1 258.9 1.0 O2A A:GTP202 4.2 258.6 1.0 N A:THR48 4.2 223.8 1.0 CG2 A:THR31 4.3 274.3 1.0 CA A:THR31 4.3 274.3 1.0 O1G A:GTP202 4.4 258.6 1.0 O3A A:GTP202 4.4 258.6 1.0 O1B A:GTP202 4.4 258.6 1.0 CA A:THR48 4.5 223.8 1.0 PA A:GTP202 4.6 258.6 1.0 O A:ILE46 4.6 237.7 1.0 OD1 A:ASP67 4.6 258.9 1.0 CG2 A:THR48 4.6 223.8 1.0 O1A A:GTP202 4.7 258.6 1.0 CG A:ASP67 4.8 258.9 1.0 CE A:LYS30 4.8 262.1 1.0 NZ A:LYS30 4.8 262.1 1.0

Magnesium binding site 2 out of 2 in the Ap-3 Bound to Myristoylated ARF1 (Q71L) and Lampi on A Lipid Nanodisc; Combined Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ap-3 Bound to Myristoylated ARF1 (Q71L) and Lampi on A Lipid Nanodisc; Combined Map within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg201 b:118.2 occ:1.00 O2G C:GTP202 1.9 136.4 1.0 OG1 C:THR48 2.0 130.2 1.0 OG1 C:THR31 2.1 122.2 1.0 O2B C:GTP202 2.2 136.4 1.0 CB C:THR48 2.8 130.2 1.0 PG C:GTP202 3.1 136.4 1.0 CB C:THR31 3.3 122.2 1.0 PB C:GTP202 3.4 136.4 1.0 O3B C:GTP202 3.5 136.4 1.0 O3G C:GTP202 3.6 136.4 1.0 OD2 C:ASP67 3.7 123.0 1.0 N C:THR48 3.8 130.2 1.0 CG2 C:THR48 3.9 130.2 1.0 CA C:THR48 3.9 130.2 1.0 OD1 C:ASP67 3.9 123.0 1.0 O2A C:GTP202 4.2 136.4 1.0 CG2 C:THR31 4.2 122.2 1.0 N C:THR31 4.2 122.2 1.0 CG C:ASP67 4.2 123.0 1.0 CA C:THR31 4.3 122.2 1.0 O1G C:GTP202 4.4 136.4 1.0 O3A C:GTP202 4.4 136.4 1.0 O1B C:GTP202 4.4 136.4 1.0 PA C:GTP202 4.6 136.4 1.0 O1A C:GTP202 4.7 136.4 1.0 C C:PRO47 4.9 128.0 1.0

M.Begley, R.W.Baker. A Structure-Based Mechanism For Initiation of Ap-3 Coated Vesicle Formation To Be Published.