Magnesium in PDB 9c6c: Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites).

The binding sites of Magnesium atom in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites). (pdb code 9c6c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites)., PDB code: 9c6c:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:91.7 occ:1.00 NE2 A:HIS243 2.1 92.0 1.0 CE1 A:HIS245 2.2 91.5 1.0 OD1 A:ASP533 2.5 119.8 1.0 CE1 A:HIS243 2.6 90.5 1.0 NE2 A:HIS245 3.1 89.9 1.0 ND1 A:HIS245 3.2 90.7 1.0 CD2 A:HIS243 3.3 87.7 1.0 CG A:ASP533 3.6 118.2 1.0 ND1 A:HIS243 3.8 89.3 1.0 OD2 A:ASP533 4.0 120.3 1.0 CG A:HIS243 4.2 83.6 1.0 CD2 A:HIS245 4.3 88.0 1.0 CG A:HIS245 4.4 87.7 1.0 NE2 A:HIS472 4.6 105.6 1.0 CB A:ASP533 4.8 112.8 1.0 CD2 A:HIS448 4.8 105.2 1.0 CD A:ARG333 5.0 82.4 1.0

Magnesium binding site 2 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:124.5 occ:1.00 NE2 B:HIS243 2.1 116.0 1.0 NE2 B:HIS245 2.1 113.6 1.0 OD1 B:ASP533 2.3 150.6 1.0 CE1 B:HIS243 2.8 115.1 1.0 CD2 B:HIS245 2.9 115.7 1.0 CE1 B:HIS245 3.2 115.7 1.0 CD2 B:HIS243 3.4 111.3 1.0 CG B:ASP533 3.4 149.8 1.0 ND1 B:HIS243 4.0 113.9 1.0 OD2 B:ASP533 4.1 150.6 1.0 CG B:HIS245 4.1 115.6 1.0 ND1 B:HIS245 4.2 116.8 1.0 CG B:HIS243 4.3 109.4 1.0 ND2 B:ASN534 4.4 158.2 1.0 CB B:ASP533 4.5 148.1 1.0 NH1 B:ARG333 4.5 87.5 1.0 CA B:ASP533 4.7 147.1 1.0

Magnesium binding site 3 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg701 b:92.3 occ:1.00 NE2 C:HIS243 2.1 90.6 1.0 CE1 C:HIS245 2.3 97.7 1.0 OD1 C:ASP533 2.4 119.1 1.0 CE1 C:HIS243 2.7 90.6 1.0 NE2 C:HIS245 3.1 96.0 1.0 ND1 C:HIS245 3.3 98.8 1.0 CD2 C:HIS243 3.3 87.7 1.0 CG C:ASP533 3.4 118.6 1.0 OD2 C:ASP533 3.8 122.4 1.0 ND1 C:HIS243 3.9 91.4 1.0 CG C:HIS243 4.2 82.8 1.0 CD2 C:HIS245 4.3 94.0 1.0 CG C:HIS245 4.4 94.2 1.0 NE2 C:HIS472 4.4 106.6 1.0 CB C:ASP533 4.7 114.1 1.0 CA C:ASP533 5.0 113.0 1.0

Magnesium binding site 4 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg702 b:122.1 occ:1.00 NE2 D:HIS243 2.1 108.6 1.0 NE2 D:HIS245 2.2 112.6 1.0 OD1 D:ASP533 2.4 142.5 1.0 CE1 D:HIS243 2.4 105.4 1.0 CD2 D:HIS245 2.9 113.5 1.0 CE1 D:HIS245 3.1 115.3 1.0 CG D:ASP533 3.3 142.2 1.0 CD2 D:HIS243 3.4 104.0 1.0 ND1 D:HIS243 3.7 102.8 1.0 OD2 D:ASP533 3.9 143.3 1.0 CG D:HIS245 4.0 112.9 1.0 ND1 D:HIS245 4.1 115.2 1.0 CG D:HIS243 4.2 100.7 1.0 CB D:ASP533 4.3 139.9 1.0 CA D:ASP533 4.3 138.5 1.0 C D:ASP533 4.6 141.8 1.0 O D:ASP533 4.6 142.5 1.0 NH1 D:ARG333 4.7 91.1 1.0

Magnesium binding site 5 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg701 b:94.9 occ:1.00 NE2 E:HIS243 2.1 89.1 1.0 CE1 E:HIS245 2.3 92.7 1.0 OD1 E:ASP533 2.5 115.3 1.0 CE1 E:HIS243 2.8 90.3 1.0 NE2 E:HIS245 3.0 92.2 1.0 CD2 E:HIS243 3.3 85.8 1.0 ND1 E:HIS245 3.3 91.2 1.0 CG E:ASP533 3.6 114.7 1.0 ND1 E:HIS243 4.0 89.5 1.0 OD2 E:ASP533 4.1 118.2 1.0 CG E:HIS243 4.3 82.1 1.0 CD2 E:HIS245 4.3 89.0 1.0 CE1 E:HIS472 4.4 105.5 1.0 CG E:HIS245 4.4 89.0 1.0 CB E:ASP533 4.8 108.5 1.0 CD2 E:HIS448 5.0 102.2 1.0

Magnesium binding site 6 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Symmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg702 b:122.7 occ:1.00 NE2 F:HIS245 2.1 120.9 1.0 OD1 F:ASP533 2.5 143.5 1.0 NE2 F:HIS243 2.7 116.0 1.0 CD2 F:HIS245 2.7 119.6 1.0 CE1 F:HIS243 3.3 113.3 1.0 CE1 F:HIS245 3.3 120.9 1.0 CG F:ASP533 3.5 142.9 1.0 OD2 F:ASP533 3.9 144.7 1.0 CD2 F:HIS243 3.9 112.7 1.0 CG F:HIS245 4.0 118.0 1.0 ND2 F:ASN534 4.1 156.1 1.0 ND1 F:HIS245 4.3 118.3 1.0 ND1 F:HIS243 4.6 111.4 1.0 CB F:ASP533 4.7 139.8 1.0 CG F:HIS243 4.9 110.7 1.0 NE2 F:HIS448 5.0 137.4 1.0

P.Majumder, D.J.Patel, C.F.Baca, L.A.Marraffini, J.H.Hickling, L.Ye, S.F.Brady, M.Teplova. The Crispr Associated Adenosine Deaminase CAD1 Converts Atp to Itp to Provide Antiviral Immunity Cell(Cambridge,Mass.) 2024.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2024.10.002