Magnesium in PDB 9c6f: Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites).

The binding sites of Magnesium atom in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites). (pdb code 9c6f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites)., PDB code: 9c6f:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:154.2 occ:1.00 NE2 A:HIS243 2.2 157.5 1.0 OD1 A:ASP533 2.3 189.3 1.0 NE2 A:HIS245 2.3 157.5 1.0 CD2 A:HIS245 3.1 158.2 1.0 CE1 A:HIS243 3.1 156.1 1.0 CD2 A:HIS243 3.1 156.1 1.0 CG A:ASP533 3.4 189.8 1.0 CE1 A:HIS245 3.4 158.3 1.0 OD2 A:ASP533 4.0 191.2 1.0 ND1 A:HIS243 4.1 155.4 1.0 CG A:HIS243 4.2 154.5 1.0 OD1 A:ASN534 4.2 204.7 1.0 CG A:HIS245 4.3 157.6 1.0 ND1 A:HIS245 4.4 158.1 1.0 CB A:ASP533 4.5 188.8 1.0 CA A:ASP533 4.6 187.8 1.0 C A:ASP533 4.9 189.1 1.0

Magnesium binding site 2 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg701 b:125.0 occ:1.00 OD1 B:ASP533 2.0 154.0 1.0 NE2 B:HIS245 2.5 134.1 1.0 NE2 B:HIS243 2.5 135.2 1.0 CE1 B:HIS243 2.9 132.8 1.0 CG B:ASP533 2.9 153.8 1.0 OD2 B:ASP533 3.3 155.1 1.0 CD2 B:HIS245 3.3 133.7 1.0 CE1 B:HIS245 3.5 133.4 1.0 CD2 B:HIS243 3.8 132.8 1.0 ND1 B:HIS243 4.2 132.0 1.0 CD2 B:HIS448 4.2 146.7 1.0 CB B:ASP533 4.3 151.5 1.0 CG B:HIS245 4.5 132.6 1.0 ND1 B:HIS245 4.5 131.5 1.0 NE2 B:HIS472 4.6 151.1 1.0 CA B:ASP533 4.6 150.8 1.0 CG B:HIS243 4.6 130.1 1.0 NE2 B:HIS448 4.7 146.5 1.0 NH1 B:ARG333 4.8 120.0 1.0

Magnesium binding site 3 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg701 b:151.9 occ:1.00 NE2 C:HIS243 2.1 144.5 1.0 NE2 C:HIS245 2.2 151.1 1.0 CE1 C:HIS243 2.4 144.0 1.0 CD2 C:HIS245 3.0 150.8 1.0 OD1 C:ASP533 3.2 183.7 1.0 CE1 C:HIS245 3.2 152.3 1.0 CD2 C:HIS243 3.4 143.9 1.0 ND1 C:HIS243 3.7 144.6 1.0 CG C:HIS243 4.2 143.2 1.0 CG C:HIS245 4.2 149.9 1.0 ND1 C:HIS245 4.3 150.8 1.0 CG C:ASP533 4.4 184.1 1.0 CD2 C:HIS448 4.6 182.6 1.0 CB C:ALA419 4.7 208.3 1.0 NE2 C:HIS472 5.0 174.7 1.0 OD2 C:ASP533 5.0 186.0 1.0

Magnesium binding site 4 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg702 b:133.6 occ:1.00 NE2 D:HIS245 2.1 122.9 1.0 OD1 D:ASP533 2.2 174.0 1.0 NE2 D:HIS243 2.8 139.3 1.0 CD2 D:HIS245 2.9 122.3 1.0 CG D:ASP533 3.1 173.9 1.0 CE1 D:HIS245 3.2 123.8 1.0 CE1 D:HIS243 3.2 136.6 1.0 OD2 D:ASP533 3.4 174.6 1.0 CD2 D:HIS243 4.0 138.7 1.0 CG D:HIS245 4.2 121.9 1.0 ND1 D:HIS245 4.2 122.0 1.0 CB D:ASP533 4.5 172.6 1.0 ND1 D:HIS243 4.5 137.0 1.0 NE2 D:HIS472 4.6 146.5 1.0 CA D:ASP533 4.9 171.9 1.0 CG D:HIS243 4.9 137.2 1.0

Magnesium binding site 5 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg702 b:156.4 occ:1.00 NE2 E:HIS245 2.1 155.6 1.0 NE2 E:HIS243 2.1 150.2 1.0 CE1 E:HIS243 2.8 149.2 1.0 CD2 E:HIS245 2.9 156.3 1.0 OD1 E:ASP533 3.0 193.4 1.0 CE1 E:HIS245 3.2 154.8 1.0 CD2 E:HIS243 3.3 148.7 1.0 CG E:ASP533 3.7 193.9 1.0 OD2 E:ASP533 3.8 194.4 1.0 ND1 E:HIS243 4.0 147.2 1.0 CG E:HIS245 4.1 155.0 1.0 ND1 E:HIS245 4.2 154.1 1.0 CG E:HIS243 4.3 146.8 1.0 CB E:ASP533 5.0 194.5 1.0

Magnesium binding site 6 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in Apo Form with Atp (Asymmetric Sites). within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg701 b:121.1 occ:1.00 NE2 F:HIS245 2.2 142.3 1.0 OD1 F:ASP533 2.4 175.0 1.0 CD2 F:HIS245 3.0 141.0 1.0 CE1 F:HIS243 3.1 134.7 1.0 NE2 F:HIS243 3.1 132.6 1.0 CE1 F:HIS245 3.3 141.0 1.0 CG F:ASP533 3.5 175.4 1.0 OD2 F:ASP533 3.9 176.4 1.0 CG F:HIS245 4.2 140.3 1.0 ND1 F:HIS245 4.3 139.9 1.0 ND1 F:HIS243 4.3 132.9 1.0 CD2 F:HIS243 4.4 132.7 1.0 CE1 F:HIS472 4.5 165.4 1.0 CB F:ASP533 4.8 174.4 1.0 CD2 F:HIS448 4.9 160.7 1.0 CA F:ASP533 4.9 173.5 1.0

P.Majumder, D.J.Patel, C.F.Baca, L.A.Marraffini, J.H.Hickling, L.Ye, S.F.Brady, M.Teplova. The Crispr Associated Adenosine Deaminase CAD1 Converts Atp to Itp to Provide Antiviral Immunity Cell(Cambridge,Mass.) 2024.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2024.10.002