Magnesium in PDB 9c77: Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp.

The binding sites of Magnesium atom in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp. (pdb code 9c77). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp., PDB code: 9c77:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg703 b:122.8 occ:1.00 NE2 A:HIS243 2.1 113.4 1.0 NE2 A:HIS245 2.1 118.8 1.0 OD1 A:ASP533 2.4 123.0 1.0 CE1 A:HIS448 2.4 141.1 1.0 CE1 A:HIS243 2.9 113.8 1.0 CE1 A:HIS245 3.0 117.7 1.0 CD2 A:HIS245 3.2 113.5 1.0 NE2 A:HIS448 3.2 139.8 1.0 CD2 A:HIS243 3.2 111.2 1.0 ND1 A:HIS448 3.3 141.9 1.0 CG A:ASP533 3.5 125.5 1.0 N7 A:ATP702 3.8 198.7 1.0 OD2 A:ASP533 3.9 128.2 1.0 ND1 A:HIS243 4.1 109.5 1.0 N6 A:ATP702 4.1 194.5 1.0 ND1 A:HIS245 4.2 113.5 1.0 CG A:HIS243 4.3 106.7 1.0 CD2 A:HIS448 4.3 136.8 1.0 CG A:HIS245 4.3 110.6 1.0 C5 A:ATP702 4.3 198.4 1.0 CG A:HIS448 4.3 137.0 1.0 NE2 A:HIS472 4.4 128.8 1.0 C6 A:ATP702 4.5 197.1 1.0 C8 A:ATP702 4.6 197.9 1.0 CE1 A:HIS472 4.8 125.6 1.0 CB A:ASP533 4.8 121.0 1.0 CA A:ASP533 4.9 119.2 1.0 NE A:ARG333 4.9 110.7 1.0

Magnesium binding site 2 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg703 b:108.0 occ:1.00 OD1 B:ASP533 2.0 125.8 1.0 NE2 B:HIS243 2.1 109.7 1.0 NE2 B:HIS448 2.1 123.1 1.0 NE2 B:HIS245 2.1 101.6 1.0 CE1 B:HIS448 2.6 124.0 1.0 CD2 B:HIS245 2.9 99.1 1.0 CE1 B:HIS243 2.9 109.0 1.0 CD2 B:HIS243 3.1 106.5 1.0 CG B:ASP533 3.2 128.2 1.0 CE1 B:HIS245 3.2 102.0 1.0 CD2 B:HIS448 3.3 118.5 1.0 OD2 B:ASP533 3.7 132.9 1.0 ND1 B:HIS448 3.9 126.3 1.0 ND1 B:HIS243 4.1 107.3 1.0 CG B:HIS245 4.1 96.2 1.0 CG B:HIS243 4.2 100.6 1.0 ND1 B:HIS245 4.2 97.7 1.0 CG B:HIS448 4.2 119.8 1.0 NE2 B:HIS472 4.2 113.7 1.0 CB B:ASP533 4.4 121.8 1.0 CA B:ASP533 4.7 121.8 1.0 N7 B:ATP702 4.8 176.9 1.0 N6 B:ATP702 4.9 174.3 1.0 CE1 B:HIS472 4.9 116.4 1.0

Magnesium binding site 3 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg703 b:101.0 occ:1.00 OD1 C:ASP533 2.1 126.4 1.0 NE2 C:HIS245 2.1 106.3 1.0 NE2 C:HIS243 2.2 120.1 1.0 CE1 C:HIS448 2.3 147.5 1.0 CE1 C:HIS245 3.0 107.2 1.0 NE2 C:HIS448 3.1 149.6 1.0 CE1 C:HIS243 3.2 116.6 1.0 CD2 C:HIS245 3.2 106.6 1.0 CG C:ASP533 3.2 129.1 1.0 CD2 C:HIS243 3.2 112.3 1.0 ND1 C:HIS448 3.4 149.0 1.0 OD2 C:ASP533 3.6 132.0 1.0 ND1 C:HIS245 4.2 104.9 1.0 NE2 C:HIS472 4.3 127.3 1.0 CG C:HIS245 4.3 108.8 1.0 ND1 C:HIS243 4.3 113.6 1.0 CG C:HIS243 4.3 106.1 1.0 CD2 C:HIS448 4.4 152.9 1.0 CB C:ASP533 4.5 122.5 1.0 N7 C:ATP702 4.5 222.3 1.0 CG C:HIS448 4.5 151.4 1.0 CE1 C:HIS472 4.6 124.5 1.0 CA C:ASP533 4.6 121.5 1.0 C5 C:ATP702 4.7 224.7 1.0 N6 C:ATP702 4.9 220.0 1.0 C6 C:ATP702 5.0 223.6 1.0 NE C:ARG333 5.0 107.2 1.0

Magnesium binding site 4 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp. within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg703 b:112.8 occ:1.00 NE2 D:HIS243 2.1 107.5 1.0 NE2 D:HIS245 2.1 105.1 1.0 NE2 D:HIS448 2.1 125.8 1.0 OD1 D:ASP533 2.2 123.6 1.0 CE1 D:HIS243 2.8 105.5 1.0 CE1 D:HIS245 3.0 103.7 1.0 CE1 D:HIS448 3.0 121.8 1.0 CD2 D:HIS448 3.1 127.2 1.0 CD2 D:HIS245 3.1 104.2 1.0 CD2 D:HIS243 3.2 106.0 1.0 N6 D:ATP702 3.3 167.7 1.0 CG D:ASP533 3.4 125.6 1.0 C6 D:ATP702 3.8 167.7 1.0 OD2 D:ASP533 4.0 130.1 1.0 ND1 D:HIS243 4.0 103.3 1.0 C5 D:ATP702 4.1 169.8 1.0 N7 D:ATP702 4.1 169.9 1.0 ND1 D:HIS245 4.1 102.0 1.0 NE2 D:HIS472 4.2 114.6 1.0 ND1 D:HIS448 4.2 120.6 1.0 CG D:HIS245 4.2 103.9 1.0 CG D:HIS448 4.2 123.4 1.0 CG D:HIS243 4.2 99.4 1.0 NH1 D:ARG333 4.4 105.6 1.0 N1 D:ATP702 4.6 166.1 1.0 CB D:ASP533 4.6 118.3 1.0 CE1 D:HIS472 5.0 114.5 1.0 CA D:ASP533 5.0 118.0 1.0

Magnesium binding site 5 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp. within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg703 b:91.6 occ:1.00 NE2 E:HIS243 2.1 112.3 1.0 NE2 E:HIS245 2.1 95.2 1.0 CE1 E:HIS448 2.2 120.4 1.0 OD1 E:ASP533 2.4 130.6 1.0 CE1 E:HIS243 3.0 112.0 1.0 NE2 E:HIS448 3.0 119.0 1.0 CE1 E:HIS245 3.1 98.0 1.0 CD2 E:HIS245 3.1 91.9 1.0 CD2 E:HIS243 3.1 106.0 1.0 ND1 E:HIS448 3.3 125.2 1.0 CG E:ASP533 3.5 132.0 1.0 OD2 E:ASP533 3.9 133.1 1.0 ND1 E:HIS243 4.1 107.9 1.0 ND1 E:HIS245 4.2 95.3 1.0 CD2 E:HIS448 4.2 119.7 1.0 CG E:HIS243 4.2 96.4 1.0 CE1 E:HIS472 4.2 122.8 1.0 CG E:HIS245 4.2 92.0 1.0 CG E:HIS448 4.3 120.7 1.0 N6 E:ATP702 4.3 167.2 1.0 N7 E:ATP702 4.4 170.9 1.0 NE2 E:HIS472 4.6 122.2 1.0 CB E:ASP533 4.7 127.6 1.0 C5 E:ATP702 4.8 168.7 1.0 C6 E:ATP702 4.8 166.6 1.0 CA E:ASP533 4.9 125.0 1.0

Magnesium binding site 6 out of 6 in the Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryoem Structure of Crispr Associated Effector, Carf-Adenosine Deaminase 1, CAD1, in CA4 Bound Form with Atp. within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg703 b:119.2 occ:1.00 OD1 F:ASP533 2.0 120.2 1.0 NE2 F:HIS243 2.1 117.0 1.0 NE2 F:HIS245 2.1 111.4 1.0 NE2 F:HIS448 2.6 140.5 1.0 CE1 F:HIS243 2.9 115.0 1.0 CE1 F:HIS448 3.0 138.8 1.0 CD2 F:HIS245 3.1 108.2 1.0 CE1 F:HIS245 3.1 111.2 1.0 CD2 F:HIS243 3.1 111.1 1.0 CG F:ASP533 3.2 122.1 1.0 OD2 F:ASP533 3.8 126.8 1.0 N6 F:ATP702 3.9 178.7 1.0 CD2 F:HIS448 3.9 139.9 1.0 ND1 F:HIS243 4.0 107.0 1.0 CG F:HIS243 4.2 103.5 1.0 ND1 F:HIS245 4.2 111.9 1.0 CG F:HIS245 4.2 106.3 1.0 NE2 F:HIS472 4.3 125.3 1.0 NH1 F:ARG333 4.3 111.0 1.0 ND1 F:HIS448 4.3 140.2 1.0 N7 F:ATP702 4.4 181.4 1.0 CB F:ASP533 4.4 117.7 1.0 C6 F:ATP702 4.5 180.1 1.0 C5 F:ATP702 4.6 182.4 1.0 CA F:ASP533 4.7 120.3 1.0 CG F:HIS448 4.8 140.1 1.0 CE1 F:HIS472 4.8 122.8 1.0

P.Majumder, D.J.Patel, C.F.Baca, L.A.Marraffini, J.H.Hickling, L.Ye, S.F.Brady, M.Teplova. The Crispr Associated Adenosine Deaminase CAD1 Converts Atp to Itp to Provide Antiviral Immunity Cell(Cambridge,Mass.) 2024.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2024.10.002